RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 PARD6GQ9BYG4 376 aaPredicted RBP13.84□□□□□ -0.19
HOXD3-201ENST00000249440 IGHV3-64DA0A0J9YX35 117 aa13.83□□□□□ -0.2
HOXD3-201ENST00000249440 TMEM30CPA0ZSE6 113 aa13.83□□□□□ -0.2
HOXD3-201ENST00000249440 ZFP92A6NM28 416 aa13.83□□□□□ -0.2
HOXD3-201ENST00000249440 BCL2P10415 239 aa13.83□□□□□ -0.2
HOXD3-201ENST00000249440 ATP1A1-AS1Q5TC04 95 aa13.83□□□□□ -0.2
HOXD3-201ENST00000249440 INO80CQ6PI98 192 aaPredicted RBP13.83□□□□□ -0.2
HOXD3-201ENST00000249440 HAPLN4Q86UW8 402 aa13.83□□□□□ -0.2
HOXD3-201ENST00000249440 ZNF251Q9BRH9 671 aa13.83□□□□□ -0.2
HOXD3-201ENST00000249440 WDR61Q9GZS3 305 aaKnown RBP13.83□□□□□ -0.2
HOXD3-201ENST00000249440 VSIRQ9H7M9 311 aa13.83□□□□□ -0.2
HOXD3-201ENST00000249440 PPIHO43447 177 aaKnown RBP13.82□□□□□ -0.2
HOXD3-201ENST00000249440 LYZL6O75951 148 aa13.82□□□□□ -0.2
HOXD3-201ENST00000249440 RAB11AP62491 216 aa13.82□□□□□ -0.2
HOXD3-201ENST00000249440 LCN15Q6UWW0 184 aa13.82□□□□□ -0.2
HOXD3-201ENST00000249440 HES4Q9HCC6 221 aa13.82□□□□□ -0.2
HOXD3-201ENST00000249440 OBP2BQ9NPH6 170 aa13.82□□□□□ -0.2
HOXD3-201ENST00000249440 GTF3C1Q12789 2109 aa13.82□□□□□ -0.2
HOXD3-201ENST00000249440 PSPNO60542 156 aa13.82□□□□□ -0.2
HOXD3-201ENST00000249440 EIF2S3P41091 472 aaKnown RBP13.82□□□□□ -0.2
HOXD3-201ENST00000249440 GLIPR1P48060 266 aa13.82□□□□□ -0.2
HOXD3-201ENST00000249440 PNRC1Q12796 327 aaPredicted RBP13.82□□□□□ -0.2
HOXD3-201ENST00000249440 Q8WTZ3 238 aa13.82□□□□□ -0.2
HOXD3-201ENST00000249440 P2RX4Q99571 388 aa13.82□□□□□ -0.2
HOXD3-201ENST00000249440 ZNF665Q9H7R5 613 aa13.82□□□□□ -0.2
HOXD3-201ENST00000249440 IL2RGP31785 369 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 KIAA0141Q14154 515 aaPredicted RBP13.81□□□□□ -0.2
HOXD3-201ENST00000249440 MSMO1Q15800 293 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 ZNF726P1Q15940 193 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 TMEM41BQ5BJD5 291 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 KLF14Q8TD94 323 aaPredicted RBP13.81□□□□□ -0.2
HOXD3-201ENST00000249440 RCC1LQ96I51 464 aaKnown RBP13.81□□□□□ -0.2
HOXD3-201ENST00000249440 OR4C12Q96R67 309 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 CACNA1DQ01668 2161 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.81□□□□□ -0.2
HOXD3-201ENST00000249440 OOEPA6NGQ2 149 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 OR3A1P47881 315 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 CEBPDP49716 269 aaPredicted RBP13.81□□□□□ -0.2
HOXD3-201ENST00000249440 TNFRSF9Q07011 255 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 FAM90A2PQ658T7 463 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 ZNF343Q6P1L6 599 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 Q6ZT83 130 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 FAM214BQ7L5A3 538 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 ASCL5Q7RTU5 278 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 TMPRSS7Q7RTY8 843 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 GCNT2Q8N0V5 402 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 OR2D2Q9H210 308 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 TINAGQ9UJW2 476 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 URGCP-MRPS24S4R325 110 aa13.81□□□□□ -0.2
HOXD3-201ENST00000249440 USF3Q68DE3 2245 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 C12orf77C9JDV5 145 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 CLDN1O95832 211 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 TNFSF10P50591 281 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 ERVFRD-1P60508 538 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 SLC38A11Q08AI6 406 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 CATR1Q13166 79 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 SLC35E4Q6ICL7 350 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 TMEM14EPQ6UXP3 125 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 OR1L1Q8NH94 360 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 TAF15Q92804 592 aaKnown RBP eCLIP13.8□□□□□ -0.2
HOXD3-201ENST00000249440 NINJ1Q92982 152 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 HSPB7Q9UBY9 170 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 CHD3Q12873 2000 aaKnown RBP13.8□□□□□ -0.2
HOXD3-201ENST00000249440 C1QTNF9BB2RNN3 333 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 IFNA1P01562 189 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 CXCL1P09341 107 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 FGF8P55075 233 aaPredicted RBP13.8□□□□□ -0.2
HOXD3-201ENST00000249440 SOX8P57073 446 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 MRGPRGQ86SM5 289 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 TMPRSS5Q9H3S3 457 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 RBKSQ9H477 322 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 NIT2Q9NQR4 276 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 TMEM242Q9NWH2 141 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 CLCF1Q9UBD9 225 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 VAX2Q9UIW0 290 aa13.8□□□□□ -0.2
HOXD3-201ENST00000249440 ATXN7O15265 892 aaPredicted RBP13.79□□□□□ -0.2
HOXD3-201ENST00000249440 RAMP3O60896 148 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 CLN5O75503 358 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 KRASP01116 189 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 HOXC12P31275 282 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 MPV17P39210 176 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 PMP22Q01453 160 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 AESQ08117 197 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 ZNF674Q2M3X9 581 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 OR8G2PQ6IF36 304 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 TIMM9Q9Y5J7 89 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 UBE2L5PA0A1B0GUS4 154 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 MAP1LC3B2A6NCE7 125 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 MLNRO43193 412 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 NBL1P41271 181 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 SSX7Q7RTT5 188 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 CXorf67Q86X51 503 aaPredicted RBP13.79□□□□□ -0.2
HOXD3-201ENST00000249440 CA5BP1Q8WTZ4 195 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 TRIB1Q96RU8 372 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 MAP1LC3BQ9GZQ8 125 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 TOLLIPQ9H0E2 274 aa13.79□□□□□ -0.2
HOXD3-201ENST00000249440 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.79□□□□□ -0.2
HOXD3-201ENST00000249440 HBZP02008 142 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 G6PCP35575 357 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 ELLP55199 621 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms