RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 NIT1Q86X76 327 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 FAM3DQ96BQ1 224 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 NRSN2Q9GZP1 204 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 DKK4Q9UBT3 224 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SPCS1Q9Y6A9 102 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM30CPA0ZSE6 113 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 UPK1AO00322 258 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 HTN1P15515 57 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SPINT3P49223 89 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PNLIPRP2P54317 469 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SUMO3P55854 103 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 GCSAMLQ5JQS6 135 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 RIPPLY2Q5TAB7 128 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM81Q6P7N7 255 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 BHLHA15Q7RTS1 189 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 WDR34Q96EX3 536 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CSF3RQ99062 836 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 DUSP21Q9H596 190 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 GORASP2Q9H8Y8 452 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CRIM1Q9NZV1 1036 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 METTL1Q9UBP6 276 aaKnown RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PTGDR2Q9Y5Y4 395 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TRAV27A0A087WT01 109 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TRAV8-6A0A0B4J262 113 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 C5orf49A4QMS7 147 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 C22orf46C9J442 243 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CD3DP04234 171 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 FGF8P55075 233 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PPP1R1AQ13522 171 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SLC35D3Q5M8T2 416 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PTPMT1Q8WUK0 201 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 R3HDM4Q96D70 268 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 RBKSQ9H477 322 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 KIR3DX1Q9H7L2 352 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CXorf36Q9H7Y0 433 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ICAM5Q9UMF0 924 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 KIAA1549LQ6ZVL6 1849 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SDCBPO00560 298 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 NME4O00746 187 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 RBFOX2O43251 390 aaKnown RBP eCLIP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 UCP1P25874 307 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SEC11AP67812 179 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SHC2P98077 582 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CSRP2Q16527 193 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PIP5KL1Q5T9C9 394 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SDHAF4Q5VUM1 108 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CYS1Q717R9 158 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 MRPL55Q7Z7F7 128 aaKnown RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ABHD12Q8N2K0 398 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 LILRA3Q8N6C8 439 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 C10orf35Q96D05 121 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 DNAJC30Q96LL9 226 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 NIPSNAP1Q9BPW8 284 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 YBX2Q9Y2T7 364 aaKnown RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 MPC1Q9Y5U8 109 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TEX15Q9BXT5 2789 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CD14P08571 375 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PTHLHP12272 177 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 RPS4Y1P22090 263 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 GPX3P22352 226 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CFHR1Q03591 330 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 INO80CQ6PI98 192 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 LINC00346Q8IVM7 164 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ZDHHC23Q8IYP9 409 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 FAM222BQ8WU58 562 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 DERL3Q96Q80 235 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PSENENQ9NZ42 101 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SERGEFQ9UGK8 458 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF106Q9H2Y7 1883 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TNRC6CQ9HCJ0 1690 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 RBFOX3A6NFN3 312 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SPINK4O60575 86 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ARG1P05089 322 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CSN3P07498 182 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 OR2T7P0C7T2 308 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TDGF1P13385 188 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 JUNBP17275 347 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ALOX5APP20292 161 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SCAND1P57086 179 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 UBE2V2Q15819 145 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SPANXN5Q5MJ07 72 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 UNQ6494/PRO21346Q6UXR6 183 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TGIF2LYQ8IUE0 185 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CYB561A3Q8NBI2 242 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 EEF1AKMT3Q96AZ1 226 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 FITM1A5D6W6 292 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 K7ERS5 55 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SDHDO14521 159 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PSPNO60542 156 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 GPR32O75388 356 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CSNK1DP48730 415 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 DGCR2P98153 550 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PNRC1Q12796 327 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CT83Q5H943 113 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 C16orf47Q6ZP98 133 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF818PQ6ZRF7 136 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SYT9Q86SS6 491 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 LINC00596Q86U02 117 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 BAP18Q8IXM2 172 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TTC9CQ8N5M4 171 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms