RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 C10orf35Q96D05 121 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 RSG1Q9BU20 258 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 CNOT2Q9NZN8 540 aaKnown RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 WASHC3Q9Y3C0 194 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 MMP24Q9Y5R2 645 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 J3QLI3 93 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 SAP30O75446 220 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 GASTP01350 101 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 BHLHA9Q7RTU4 235 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 SYT8Q8NBV8 401 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 OR1L8Q8NGR8 309 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 C16orf92Q96LL3 132 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 IMMP1LQ96LU5 166 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 MAP1LC3CQ9BXW4 147 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 SEPSECSQ9HD40 501 aaKnown RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 A0A0G2JMZ2 1700 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 LRRC37A2A6NM11 1700 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 USP9XQ93008 2570 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 LCTP09848 1927 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 TMEM82A0PJX8 343 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 NME4O00746 187 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 FABP7O15540 132 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 HSBP1O75506 76 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 CDK2AP2O75956 126 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 CYB5R3P00387 301 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 MGMTP16455 207 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 SSX1Q16384 188 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF362Q5T0B9 420 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 STHQ8IWL8 128 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 ABHD12Q8N2K0 398 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 STXBP6Q8NFX7 210 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 OR52B4Q8NGK2 314 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 OR9G1Q8NH87 305 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 RNF166Q96A37 237 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 WDR34Q96EX3 536 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 PACRGQ96M98 296 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 SPACA5Q96QH8 159 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 TMEM204Q9BSN7 226 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 MTORP42345 2549 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 UBE2L6O14933 153 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 WFIKKN1Q96NZ8 548 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 SLC25A22Q9H936 323 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 TAS2R4Q9NYW5 299 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 SERTM2A0A1B0GWG4 89 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 SPRY1O43609 319 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-218ENST00000640036 SLC25A20O43772 301 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 ELOBQ15370 118 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 SPANXN5Q5MJ07 72 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF561Q8N587 486 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 GCSAMQ8N6F7 178 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 SLC26A10Q8NG04 563 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 SCARB1Q8WTV0 552 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 WDYHV1Q96HA8 205 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 NAV2Q8IVL1 2488 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 MED12LQ86YW9 2145 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 A0A0G2JNJ9 132 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 ARRDC5A6NEK1 342 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 TBX19O60806 448 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 FBXO24O75426 580 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 MSMBP08118 114 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 WNT2P09544 360 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 RPL35P42766 123 aaKnown RBP4.34□□□□□ -1.71
SCN1A-218ENST00000640036 FMODQ06828 376 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 C19orf54Q5BKX5 351 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 MRPL14Q6P1L8 145 aaKnown RBP4.34□□□□□ -1.71
SCN1A-218ENST00000640036 OR1L4Q8NGR5 311 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 OR10J6PQ8NGY7 276 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 KLF14Q8TD94 323 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-218ENST00000640036 ASB10Q8WXI3 467 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 TP53RKQ96S44 253 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 Q9UFV3 132 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 ST6GALNAC2Q9UJ37 374 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 FLVCR1Q9Y5Y0 555 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 IGHV3-43A0A0B4J1X8 118 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 TCRBV5S1A1TA0A578 114 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 H3BMH7 237 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 M0QYG6 137 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 M0R3E3 92 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 UPK3AO75631 287 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 RHBDL1O75783 438 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 H2AFB1P0C5Y9 115 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 IGHV3-43DP0DP04 118 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 PPOXP50336 477 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 NHLH2Q02577 135 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 SRSF7Q16629 238 aaKnown RBP eCLIP4.34□□□□□ -1.71
SCN1A-218ENST00000640036 FAM213BQ8TBF2 198 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 MS4A10Q96PG2 267 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 SLC29A1Q99808 456 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 POLQO75417 2590 aa4.34□□□□□ -1.71
SCN1A-218ENST00000640036 FAM221AA4D161 298 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 AP4M1O00189 453 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 PEX11BO96011 259 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 ALDOCP09972 364 aaKnown RBP4.34□□□□□ -1.72
SCN1A-218ENST00000640036 FABP4P15090 132 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 KLK2P20151 261 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 ERVS71-1P61550 626 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 PAX5Q02548 391 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 TEX30Q5JUR7 227 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 CNIH3Q8TBE1 160 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM45BQ96B21 275 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms