RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 IL2RGP31785 369 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 CEACAM6P40199 344 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 SULT1A2P50226 295 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 TMED6Q8WW62 240 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 MSL2Q9HCI7 577 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 OR2S2Q9NQN1 319 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 LPAR3Q9UBY5 353 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 DOPEY2Q9Y3R5 2298 aa15.39■□□□□ 0.06
CLN3-263ENST00000637871 PSPNO60542 156 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 GATA4P43694 442 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 RAB5CP51148 216 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 VAMP2P63027 116 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 BAXQ07812 192 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 PRAMEF6Q5VXH4 476 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 RPL7L1Q6DKI1 246 aaKnown RBP15.39■□□□□ 0.05
CLN3-263ENST00000637871 OR2C3Q8N628 320 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 NUP37Q8NFH4 326 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 DMBX1Q8NFW5 382 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 OR2Z1Q8NG97 314 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 LRRC29Q8WV35 223 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 NINJ1Q92982 152 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 SMIM8Q96KF7 97 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 C11orf1Q9H5F2 150 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 RCL1Q9Y2P8 373 aaKnown RBP15.39■□□□□ 0.05
CLN3-263ENST00000637871 USP9YO00507 2555 aaPredicted RBP15.39■□□□□ 0.05
CLN3-263ENST00000637871 ADH4P08319 380 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 GZMHP20718 246 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 ZNF826PQ6ZT77 177 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 RNASE6Q93091 150 aaKnown RBP15.39■□□□□ 0.05
CLN3-263ENST00000637871 SNX22Q96L94 193 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 MMP26Q9NRE1 261 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 OR1A1Q9P1Q5 309 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 DUSP13Q9UII6 198 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 ZDHHC8Q9ULC8 765 aa15.39■□□□□ 0.05
CLN3-263ENST00000637871 ADAM20O43506 726 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 TNFSF4P23510 183 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 PTAFRP25105 342 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 PRDX2P32119 198 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 OR3A1P47881 315 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 HTD2P86397 168 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 ZNF266Q14584 549 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 FBXL19-AS1Q494R0 122 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 C22orf34Q6ZV56 151 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 ZNF645Q8N7E2 425 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 GINS3Q9BRX5 216 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 UFSP2Q9NUQ7 469 aa15.38■□□□□ 0.05
CLN3-263ENST00000637871 C16orf97H3BN30 126 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 WRBO00258 174 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 SPINT2O43291 252 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 PITX3O75364 302 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 COL10A1Q03692 680 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 KRBOX4Q5JUW0 171 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 TMEM108Q6UXF1 575 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 TMEM171Q8WVE6 324 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 MEGF10Q96KG7 1140 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 RAB40CQ96S21 281 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 DIRC2Q96SL1 478 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 PARP11Q9NR21 331 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 FZR1Q9UM11 496 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 ICE1Q9Y2F5 2266 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 PRR14LQ5THK1 2151 aa15.37■□□□□ 0.05
CLN3-263ENST00000637871 ZNF705EA8MWA4 302 aaPredicted RBP15.36■□□□□ 0.05
CLN3-263ENST00000637871 VSTM5A8MXK1 200 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 C12orf77C9JDV5 145 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 MGST3O14880 152 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 WNT9BO14905 357 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 CD40P25942 277 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 CATR1Q13166 79 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 CR1LQ2VPA4 569 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 ALKBH2Q6NS38 261 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 FAM219AQ8IW50 185 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 COMMD1Q8N668 190 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 OR1S2Q8NGQ3 325 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 LYRM2Q9NU23 88 aaPredicted RBP15.36■□□□□ 0.05
CLN3-263ENST00000637871 IL19Q9UHD0 177 aa15.36■□□□□ 0.05
CLN3-263ENST00000637871 HBZP02008 142 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 GABRA2P47869 451 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 C5orf24Q7Z6I8 188 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 LINC01560Q8TB33 94 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 COQ2Q96H96 371 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 LINC00052Q96N35 136 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 COA4Q9NYJ1 87 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 KCNS2Q9ULS6 477 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 LAMP3Q9UQV4 416 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 STRAPQ9Y3F4 350 aaKnown RBP15.35■□□□□ 0.05
CLN3-263ENST00000637871 FAM90A26D6RGX4 464 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 LHBP01229 141 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 IGLV2-14P01704 120 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 OR8U9P0C7N5 309 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 PSG2P11465 335 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 COL8A1P27658 744 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 RPL23AP62750 156 aaKnown RBP15.35■□□□□ 0.05
CLN3-263ENST00000637871 EWSR1Q01844 656 aaKnown RBP eCLIP15.35■□□□□ 0.05
CLN3-263ENST00000637871 AESQ08117 197 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 PJVKQ0ZLH3 352 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 SWI5Q1ZZU3 235 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 TUSC1Q2TAM9 212 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 PRR18Q8N4B5 295 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 DRAM1Q8N682 238 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 OR8U1Q8NH10 309 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms