RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 MOSP00540 346 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 PSMB9P28065 219 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 CD1BP29016 333 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 MRPS15P82914 257 aaKnown RBP9.22□□□□□ -0.93
CLN3-257ENST00000637110 QRFPP83859 136 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 SSX1Q16384 188 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 C2orf76Q3KRA6 126 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 SLC35E3Q7Z769 313 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 ZNF554Q86TJ5 538 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 FOXRED2Q8IWF2 684 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 IZUMO1Q8IYV9 350 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 ZNF439Q8NDP4 499 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 OR2AK2Q8NG84 335 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 RIMS4Q9H426 269 aaPredicted RBP9.22□□□□□ -0.93
CLN3-257ENST00000637110 AK3Q9UIJ7 227 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 LINC00527Q9UJ94 153 aa9.22□□□□□ -0.93
CLN3-257ENST00000637110 TSSC4Q9Y5U2 329 aaPredicted RBP9.22□□□□□ -0.93
CLN3-257ENST00000637110 A0A0A6YYD4 124 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 ZNF736B4DX44 427 aaPredicted RBP9.21□□□□□ -0.94
CLN3-257ENST00000637110 HSPA12AO43301 675 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 YPEL1O60688 119 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 MRPS14O60783 128 aaKnown RBP9.21□□□□□ -0.94
CLN3-257ENST00000637110 PF4P02776 101 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 CD37P11049 281 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 SLC35B1P78383 322 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 HTD2P86397 168 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 CD83Q01151 205 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 HMGN3Q15651 99 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 STEAP3Q658P3 488 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 C22orf42Q6IC83 251 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 C10orf99Q6UWK7 81 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 MOB1BQ7L9L4 216 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 ZNF329Q86UD4 541 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 OR56B1Q8NGI3 324 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 WIPF2Q8TF74 440 aaPredicted RBP9.21□□□□□ -0.94
CLN3-257ENST00000637110 CHPT1Q8WUD6 406 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 ST6GALNAC6Q969X2 333 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 PHF21AQ96BD5 680 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 NOL4LQ96MY1 436 aaPredicted RBP9.21□□□□□ -0.94
CLN3-257ENST00000637110 YPEL2Q96QA6 119 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 CMSS1Q9BQ75 279 aaKnown RBP9.21□□□□□ -0.94
CLN3-257ENST00000637110 HDHD3Q9BSH5 251 aaPredicted RBP9.21□□□□□ -0.94
CLN3-257ENST00000637110 NDUFB11Q9NX14 153 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 RAB22AQ9UL26 194 aa9.21□□□□□ -0.94
CLN3-257ENST00000637110 A0A075B6Q4 140 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 TRDV1A0A1B0GX56 115 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 ST8SIA5O15466 376 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 LANCL1O43813 399 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 CD33P20138 364 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 RAB3BP20337 219 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 OR10A3P58181 314 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 EBI3Q14213 229 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 SPARTQ8N0X7 666 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 FCGR1BQ92637 280 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 RBMXL1Q96E39 390 aaKnown RBP9.2□□□□□ -0.94
CLN3-257ENST00000637110 ARHGAP5-AS1Q96IT6 56 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 LIN7CQ9NUP9 197 aaKnown RBP9.2□□□□□ -0.94
CLN3-257ENST00000637110 SLC23A1Q9UHI7 598 aa9.2□□□□□ -0.94
CLN3-257ENST00000637110 BIRC6Q9NR09 4857 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 TRAV1-2A0A0B4J238 106 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 TMEM272A0A1B0GTI8 110 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 SMIM30A4D0T7 59 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 ADARB2-AS1A8MUL3 147 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 NUDT19A8MXV4 375 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 NAPSAO96009 420 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 CD3GP09693 182 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 GADD45AP24522 165 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 CEACAM6P40199 344 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 OR3A3P47888 321 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 ZNF137PP52743 207 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 HLA-DRB3P79483 266 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 LSAMPQ13449 338 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 MMDQ15546 238 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 TCTEX1D4Q5JR98 221 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 FAM89BQ8N5H3 189 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 Q8N9W7 124 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 OR8H1Q8NGG4 311 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 RAB3CQ96E17 227 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 S1PR3Q99500 378 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 ZNF251Q9BRH9 671 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 PECRQ9BY49 303 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 MRPL20Q9BYC9 149 aaKnown RBP9.19□□□□□ -0.94
CLN3-257ENST00000637110 YTHDF1Q9BYJ9 559 aaKnown RBP9.19□□□□□ -0.94
CLN3-257ENST00000637110 C12orf4Q9NQ89 552 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 PIPOXQ9P0Z9 390 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 HSF4Q9ULV5 492 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 MGAT4AQ9UM21 535 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 SSR3Q9UNL2 185 aa9.19□□□□□ -0.94
CLN3-257ENST00000637110 DNAH3Q8TD57 4116 aa9.18□□□□□ -0.94
CLN3-257ENST00000637110 SAA2-SAA4A0A096LPE2 208 aa9.18□□□□□ -0.94
CLN3-257ENST00000637110 METTL21EPA6NDL7 271 aa9.18□□□□□ -0.94
CLN3-257ENST00000637110 LINC01548A6NM66 108 aa9.18□□□□□ -0.94
CLN3-257ENST00000637110 IFITM5A6NNB3 132 aa9.18□□□□□ -0.94
CLN3-257ENST00000637110 AP4M1O00189 453 aa9.18□□□□□ -0.94
CLN3-257ENST00000637110 RAB29O14966 203 aa9.18□□□□□ -0.94
CLN3-257ENST00000637110 RRP9O43818 475 aaKnown RBP9.18□□□□□ -0.94
CLN3-257ENST00000637110 IGHG2P01859 326 aa9.18□□□□□ -0.94
CLN3-257ENST00000637110 SCTP09683 121 aa9.18□□□□□ -0.94
CLN3-257ENST00000637110 SAA2P0DJI9 122 aaPredicted RBP9.18□□□□□ -0.94
CLN3-257ENST00000637110 SLC2A2P11168 524 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms