RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TMEM69Q5SWH9 247 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 LDLRAD2Q5SZI1 272 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 TPTE2P1Q5T6R2 138 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 STEAP3Q658P3 488 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 DYNAPQ8N1N2 210 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 NUDCD2Q8WVJ2 157 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 MAFIPQ8WZ33 124 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 TOMM40LQ969M1 308 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 ZNF230Q9UIE0 474 aaPredicted RBP14.62□□□□□ -0.07
CLN3-243ENST00000635973 VPREB3Q9UKI3 123 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 ELF5Q9UKW6 265 aaPredicted RBP14.62□□□□□ -0.07
CLN3-243ENST00000635973 TRDCB7Z8K6 153 aa14.61□□□□□ -0.07
CLN3-243ENST00000635973 H3BMQ9 156 aa14.61□□□□□ -0.07
CLN3-243ENST00000635973 PPP1CCP36873 323 aaKnown RBP14.61□□□□□ -0.07
CLN3-243ENST00000635973 KIR2DS4P43632 304 aa14.61□□□□□ -0.07
CLN3-243ENST00000635973 KIR2DS1Q14954 304 aa14.61□□□□□ -0.07
CLN3-243ENST00000635973 PNLIPRP3Q17RR3 467 aa14.61□□□□□ -0.07
CLN3-243ENST00000635973 FAM53AQ6NSI3 398 aaPredicted RBP14.61□□□□□ -0.07
CLN3-243ENST00000635973 LINC01006Q8NI28 216 aa14.61□□□□□ -0.07
CLN3-243ENST00000635973 CITED1Q99966 193 aa14.61□□□□□ -0.07
CLN3-243ENST00000635973 SLC23A1Q9UHI7 598 aa14.61□□□□□ -0.07
CLN3-243ENST00000635973 TRRAPQ9Y4A5 3859 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 FABP7O15540 132 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 XRCC3O43542 346 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 EIF4EP06730 217 aaKnown RBP14.6□□□□□ -0.07
CLN3-243ENST00000635973 SCTP09683 121 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 DTYMKP23919 212 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 LY6EQ16553 131 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 AANATQ16613 207 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 MORN2Q502X0 79 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 CCDC144NLQ6NUI1 221 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 C8orf31Q8N9H6 132 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 DTX3Q8N9I9 347 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 OR2AK2Q8NG84 335 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 ABHD14AQ9BUJ0 271 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 CEPT1Q9Y6K0 416 aa14.6□□□□□ -0.07
CLN3-243ENST00000635973 SMIM31A0A1B0GVY4 71 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 FAM25AB3EWG3 89 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 FAM25CB3EWG5 89 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 FAM25GB3EWG6 89 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 SLC31A2O15432 143 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 YPEL1O60688 119 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 HPGDSO60760 199 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 APOA1P02647 267 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 ZBTB25P24278 435 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 DEFA6Q01524 100 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 LINC00311Q8N616 119 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 OR4A4PQ8NGN8 299 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 CMTM3Q96MX0 182 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 YPEL2Q96QA6 119 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 OCSTAMPQ9BR26 566 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 ST6GALNAC5Q9BVH7 336 aa14.59□□□□□ -0.07
CLN3-243ENST00000635973 CCDC59Q9P031 241 aaKnown RBP14.59□□□□□ -0.07
CLN3-243ENST00000635973 VGLL3A8MV65 326 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 OOSP1A8MZH6 123 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 HSD17B6O14756 317 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 BET1O15155 118 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 RGS5O15539 181 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 LPLP06858 475 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 BRS3P32247 399 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 RAB13P51153 203 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 Q6ZSV7 163 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 SLC25A48Q6ZT89 311 aaKnown RBP14.58□□□□□ -0.08
CLN3-243ENST00000635973 LYG1Q8N1E2 194 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 ZNF439Q8NDP4 499 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 AUNIPQ9H7T9 357 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 OR1A1Q9P1Q5 309 aa14.58□□□□□ -0.08
CLN3-243ENST00000635973 RSL24D1Q9UHA3 163 aaKnown RBP14.58□□□□□ -0.08
CLN3-243ENST00000635973 LY6LH3BQJ8 138 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 GSTT2P0CG29 244 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 GSTT2BP0CG30 244 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 CEACAM6P40199 344 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 RAB7AP51149 207 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 PROK1P58294 105 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 TAS2R20P59543 309 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 SRSF7Q16629 238 aaKnown RBP eCLIP14.57□□□□□ -0.08
CLN3-243ENST00000635973 CT45A1Q5HYN5 189 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 CT45A3Q8NHU0 189 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 DYNC2LI1Q8TCX1 351 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 GINS4Q9BRT9 223 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 MMP27Q9H306 513 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 C16orf95Q9H693 158 aa14.57□□□□□ -0.08
CLN3-243ENST00000635973 MRPS7Q9Y2R9 242 aaKnown RBP14.57□□□□□ -0.08
CLN3-243ENST00000635973 SSX5O60225 188 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 GAPDHP04406 335 aaKnown RBP14.56□□□□□ -0.08
CLN3-243ENST00000635973 PTHLHP12272 177 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 ELK1P19419 428 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 REG1BP48304 166 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 ZNF134P52741 427 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 OR10J5Q8NHC4 309 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 EDARADDQ8WWZ3 215 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 RAB18Q9NP72 206 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 IFT46Q9NQC8 304 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 ADAM30Q9UKF2 790 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 PITPNC1Q9UKF7 332 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 TCF19Q9Y242 345 aa14.56□□□□□ -0.08
CLN3-243ENST00000635973 IGKV1-6A0A0C4DH72 117 aa14.55□□□□□ -0.08
CLN3-243ENST00000635973 ST8SIA5O15466 376 aa14.55□□□□□ -0.08
CLN3-243ENST00000635973 DYNLT3P51808 116 aa14.55□□□□□ -0.08
CLN3-243ENST00000635973 DIAPH2-AS1Q14236 149 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms