RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ZNF251Q9BRH9 671 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 C7orf50Q9BRJ6 194 aaKnown RBP3.21□□□□□ -1.9
LINC00540-201ENST00000611481 TAPBPLQ9BX59 468 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 RBKSQ9H477 322 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 TUBB1Q9H4B7 451 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 TUBA4BQ9H853 241 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 ADGRL4Q9HBW9 690 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 MEPEQ9NQ76 525 aaPredicted RBP3.21□□□□□ -1.9
LINC00540-201ENST00000611481 THUMPD1Q9NXG2 353 aaKnown RBP3.21□□□□□ -1.9
LINC00540-201ENST00000611481 VNN3Q9NY84 501 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 NUDT4Q9NZJ9 180 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 CLEC2DQ9UHP7 191 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 URGCP-MRPS24S4R325 110 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 V9GYY9 64 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 A0A1B0GTI1 187 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 GNG14A0A1W2PPG7 69 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 SNAI2O43623 268 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 PTHP01270 115 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 SERPINE1P05121 402 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 SNRPCP09234 159 aaKnown RBP3.2□□□□□ -1.9
LINC00540-201ENST00000611481 OR9G9P0C7N8 305 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 MGMTP16455 207 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 OR3A4PP47883 348 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 CRISP1P54107 249 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 RWDD2BP57060 319 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 TSPAN5P62079 268 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 DHODHQ02127 395 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 FADDQ13158 208 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 C1DQ13901 141 aaKnown RBP3.2□□□□□ -1.9
LINC00540-201ENST00000611481 TNXAQ16473 311 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 ABCA11PQ4W5N1 156 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 HCP5Q6MZN7 132 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 C1orf94Q6P1W5 598 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 PGAP1Q75T13 922 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 DCXRQ7Z4W1 244 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 GTSCR1Q86UQ5 136 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 DYNAPQ8N1N2 210 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 OR6Q1Q8NGQ2 317 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 CDC26Q8NHZ8 85 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 RPS4Y2Q8TD47 263 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 PYROXD1Q8WU10 500 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 ACOT11Q8WXI4 607 aaPredicted RBP3.2□□□□□ -1.9
LINC00540-201ENST00000611481 SH3GL3Q99963 347 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 TMEM59Q9BXS4 323 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 DERL2Q9GZP9 239 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 WDR13Q9H1Z4 485 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 B3GAT2Q9NPZ5 323 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 THYN1Q9P016 225 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 CCDC59Q9P031 241 aaKnown RBP3.2□□□□□ -1.9
LINC00540-201ENST00000611481 WARS2Q9UGM6 360 aaKnown RBP3.2□□□□□ -1.9
LINC00540-201ENST00000611481 NAGKQ9UJ70 344 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 SAMD4AQ9UPU9 718 aaKnown RBP3.2□□□□□ -1.9
LINC00540-201ENST00000611481 ACOT9Q9Y305 439 aa3.2□□□□□ -1.9
LINC00540-201ENST00000611481 RPL36Q9Y3U8 105 aaKnown RBP3.2□□□□□ -1.9
LINC00540-201ENST00000611481 A0A0J9YWU9 116 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 C5orf49A4QMS7 147 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 FAM231BA6NCW3 169 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 TMEM210A6NLX4 147 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 PMS2P5A8MQ11 134 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 VGLL3A8MV65 326 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 PPP1R2P9O14990 202 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 SUPT3HO75486 399 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 SC5DO75845 299 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 GYPAP02724 150 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 SNRPAP09012 282 aaKnown RBP3.19□□□□□ -1.9
LINC00540-201ENST00000611481 DUX4L4P0CJ87 422 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 GGT2P36268 569 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 LEPP41159 167 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 AQP2P41181 271 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 IDH2P48735 452 aaKnown RBP3.19□□□□□ -1.9
LINC00540-201ENST00000611481 SRP9P49458 86 aaKnown RBP3.19□□□□□ -1.9
LINC00540-201ENST00000611481 POLR2HP52434 150 aaKnown RBP3.19□□□□□ -1.9
LINC00540-201ENST00000611481 KIR2DS1Q14954 304 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 TRAM2Q15035 370 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 OR8B8Q15620 311 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 KCNJ8Q15842 424 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 ZNF181Q2M3W8 571 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 KIAA1644Q3SXP7 199 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 ZNF876PQ49A33 203 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 WDR38Q5JTN6 314 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 SAPCD1Q5SSQ6 148 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 SEL1L2Q5TEA6 688 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 MEDAGQ5VYS4 303 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 BAIAP2L2Q6UXY1 529 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 ZNF546Q86UE3 836 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 C20orf196Q8IYI0 205 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 OR5AS1Q8N127 324 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 LY6G5BQ8NDX9 201 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 NOXO1Q8NFA2 376 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 OR8J2Q8NGG1 315 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 OR10G7Q8NGN6 311 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 OR11L1Q8NGX0 322 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 OR6N1Q8NGY5 312 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 C16orf78Q8WTQ4 265 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 DCAKDQ8WVC6 231 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 C1orf54Q8WWF1 131 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 FRZBQ92765 325 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 TMEM80Q96HE8 168 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 MS4A4EQ96PG1 132 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 EMC6Q9BV81 110 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms