RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 NBR2O15453 112 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 RBBP9O75884 186 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 SPNP16150 400 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 ZNF19P17023 458 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 ALDH3B2P48448 385 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 RBM11P57052 281 aaKnown RBP4.88□□□□□ -1.63
CUX1-220ENST00000607092 ACTBP60709 375 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 SNRPGP62308 76 aaKnown RBP4.88□□□□□ -1.63
CUX1-220ENST00000607092 RAB40BQ12829 278 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 DIAPH2-AS1Q14236 149 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 C5orf64Q2M2E5 130 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 LY6G6FQ5SQ64 297 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 C6orf141Q5SZD1 244 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 ATAD3CQ5T2N8 411 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 ZNF660Q6AZW8 331 aaPredicted RBP4.88□□□□□ -1.63
CUX1-220ENST00000607092 LIN54Q6MZP7 749 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 FAM71F2Q6NXP2 309 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 ZNF497Q6ZNH5 498 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 OVCH2Q7RTZ1 564 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 GTSCR1Q86UQ5 136 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 SATL1Q86VE3 508 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 C8orf59Q8N0T1 100 aaPredicted RBP4.88□□□□□ -1.63
CUX1-220ENST00000607092 MINDY2Q8NBR6 621 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 OR51A4Q8NGJ6 313 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 PLPPR1Q8TBJ4 325 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 GPR148Q8TDV2 347 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 FBLIM1Q8WUP2 373 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 CYGBQ8WWM9 190 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 DCUN1D4Q92564 292 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 PELI1Q96FA3 418 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 HSPB9Q9BQS6 159 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 ALG8Q9BVK2 526 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 EDA2RQ9HAV5 297 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 TMEM138Q9NPI0 162 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 TRAPPC2LQ9UL33 140 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 BLOC1S6Q9UL45 172 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 FOXA2Q9Y261 457 aaPredicted RBP4.88□□□□□ -1.63
CUX1-220ENST00000607092 SACSQ9NZJ4 4579 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 A0A1W2PPE3 182 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 J3QRE1 110 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 ZNF701M0R085 212 aaPredicted RBP4.87□□□□□ -1.63
CUX1-220ENST00000607092 M0R129 80 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 GABRPO00591 440 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 MITFO75030 526 aaPredicted RBP4.87□□□□□ -1.63
CUX1-220ENST00000607092 MT-ND4P03905 459 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 HSPB1P04792 205 aaKnown RBP4.87□□□□□ -1.63
CUX1-220ENST00000607092 SMIM18P0DKX4 95 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 SLC2A2P11168 524 aaPredicted RBP4.87□□□□□ -1.63
CUX1-220ENST00000607092 MC5RP33032 325 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 ZNF93P35789 620 aaPredicted RBP4.87□□□□□ -1.63
CUX1-220ENST00000607092 CRIP2P52943 208 aaPredicted RBP4.87□□□□□ -1.63
CUX1-220ENST00000607092 NANOS3P60323 173 aaKnown RBP4.87□□□□□ -1.63
CUX1-220ENST00000607092 GABARAPL2P60520 117 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 HTD2P86397 168 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 LSAMPQ13449 338 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 PLGLAQ15195 96 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 PIGYQ3MUY2 71 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 CCDC58Q4VC31 144 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 AKIRIN2Q53H80 203 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 ZNF529Q6P280 563 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 CD200R1LQ6Q8B3 271 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 NPBQ8NG41 125 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 OR2AK2Q8NG84 335 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 CHAC2Q8WUX2 184 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 THRSPQ92748 146 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 C4orf36Q96KX1 117 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 RNF5Q99942 180 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 ABHD14AQ9BUJ0 271 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 TOLLIPQ9H0E2 274 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 TUBA4BQ9H853 241 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 GNB4Q9HAV0 340 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 RANGRFQ9HD47 186 aaPredicted RBP4.87□□□□□ -1.63
CUX1-220ENST00000607092 VCX3AQ9NNX9 186 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 ETAA1Q9NY74 926 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 STEAP1Q9UHE8 339 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 JPT1Q9UK76 154 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 ING4Q9UNL4 249 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 EXOGQ9Y2C4 368 aaKnown RBP4.87□□□□□ -1.63
CUX1-220ENST00000607092 WSB1Q9Y6I7 421 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 HUWE1Q7Z6Z7 4374 aaKnown RBP4.87□□□□□ -1.63
CUX1-220ENST00000607092 TNCP24821 2201 aa4.87□□□□□ -1.63
CUX1-220ENST00000607092 IGHV7-81A0A0B4J1V7 117 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 IRGMA1A4Y4 181 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 OR5H14A6NHG9 310 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 C12orf77C9JDV5 145 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 H3BUA1 57 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 GEMIN2O14893 280 aaKnown RBP4.86□□□□□ -1.63
CUX1-220ENST00000607092 SHOXO15266 292 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 ATP6V0E1O15342 81 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 SLC25A17O43808 307 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 NDUFA3O95167 84 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 IGLV1-51P01701 117 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 HBZP02008 142 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 GNAO1P09471 354 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 IGHV4-30-4P0DP06 118 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 ARSBP15848 533 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 RAB6AP20340 208 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 AADACP22760 399 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 CRHBPP24387 322 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 BLVRBP30043 206 aaPredicted RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms