RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, human

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-218	ENST00000598907	ARFRP1	Q13795	201 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	SRSF7	Q16629	238 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	KRBOX4	Q5JUW0	171 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	GDPD3	Q7L5L3	318 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	SNX29P2	Q8IUI4	249 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	LY6G5B	Q8NDX9	201 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	C8orf46	Q8TAG6	207 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	NEK7	Q8TDX7	302 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	NUDCD2	Q8WVJ2	157 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	CORO2A	Q92828	525 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	ASCL2	Q99929	193 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	DCTN5	Q9BTE1	182 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	C12orf4	Q9NQ89	552 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	MBNL3	Q9NUK0	354 aa	Known RBP	11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	KIF25	Q9UIL4	384 aa		11.18	□□□□□ -0.62
SHKBP1-218	ENST00000598907	ODAM	A1E959	279 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	CHST1	O43916	411 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	ECD	O95905	644 aa	Predicted RBP	11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	LPL	P06858	475 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	NDUFB7	P17568	137 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	DTYMK	P23919	212 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	GNG2	P59768	71 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	GUCA2A	Q02747	115 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	MEF2C	Q06413	473 aa	Predicted RBP	11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	EGFEM1P	Q0D2K5	195 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	DCTN2	Q13561	401 aa	Known RBP	11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907		Q6ZS49	121 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	TCF23	Q7RTU1	214 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	TPRX1	Q8N7U7	411 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	GDPD1	Q8N9F7	314 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	SMIM4	Q8WVI0	70 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	DPF1	Q92782	380 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	RCC1L	Q96I51	464 aa	Known RBP	11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	SSX3	Q99909	188 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	NPFFR1	Q9GZQ6	430 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	C19orf12	Q9NSK7	152 aa		11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	RPUSD1	Q9UJJ7	312 aa	Known RBP	11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	RBMX2	Q9Y388	322 aa	Known RBP	11.17	□□□□□ -0.62
SHKBP1-218	ENST00000598907	TRBV23-1	A0A0A0MS06	115 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	PEX14	O75381	377 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	FCGR3A	P08637	254 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	NAT1	P18440	290 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	PAX6	P26367	422 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	CD40LG	P29965	261 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	CBX5	P45973	191 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	PPP5C	P53041	499 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	DGCR2	P98153	550 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	EDDM3A	Q14507	147 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	ZNF846	Q147U1	533 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	TRAPPC6B	Q86SZ2	158 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	HOGA1	Q86XE5	327 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	OR4K15	Q8NH41	348 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	OR52I2	Q8NH67	350 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	FCAMR	Q8WWV6	532 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	DMRTB1	Q96MA1	342 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	TSC22D3	Q99576	134 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	WDR12	Q9GZL7	423 aa	Known RBP	11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907		Q9N2K0	584 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	SERTAD4	Q9NUC0	356 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	MTFP1	Q9UDX5	166 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	KPTN	Q9Y664	436 aa		11.16	□□□□□ -0.62
SHKBP1-218	ENST00000598907	MEIKIN	A0A087WXM9	373 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	LYL1	P12980	280 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	RCC1	P18754	421 aa	Predicted RBP	11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	EDDM3B	P56851	147 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	RPL31	P62899	125 aa	Known RBP	11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	SSBP1	Q04837	148 aa	Known RBP	11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	PYDC2	Q56P42	97 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	TMEM200B	Q69YZ2	307 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	MOB1B	Q7L9L4	216 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	ZNF554	Q86TJ5	538 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907		Q8N402	240 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	OR13A1	Q8NGR1	328 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	CCDC107	Q8WV48	283 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	C17orf50	Q8WW18	174 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	LINC00574	Q9H8X3	128 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	ZNF702P	Q9H963	129 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	ING3	Q9NXR8	418 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	OR6C3	Q9NZP0	311 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	KLK11	Q9UBX7	282 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	ZNF230	Q9UIE0	474 aa	Predicted RBP	11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	UBE2J1	Q9Y385	318 aa	Predicted RBP	11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	LINC00312	Q9Y6C7	94 aa		11.15	□□□□□ -0.62
SHKBP1-218	ENST00000598907	IGKV1D-8	A0A087WSZ0	117 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	TRAV39	A0A0B4J263	110 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	hADV38S2	A0JD32	116 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	C15orf65	H3BRN8	121 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	ORC5	O43913	435 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	GZMH	P20718	246 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	DLX6	P56179	175 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	MRPS15	P82914	257 aa	Known RBP	11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	ZNF273	Q14593	569 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	HMGN3	Q15651	99 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	BAK1	Q16611	211 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	C17orf58	Q2M2W7	97 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	ZFAND6	Q6FIF0	208 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	GVQW1	Q8N7I0	195 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	ZNF565	Q8N9K5	539 aa		11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	H1FX	Q92522	213 aa	Known RBP	11.14	□□□□□ -0.63
SHKBP1-218	ENST00000598907	TRIM63	Q969Q1	353 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms