RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 DLX6P56179 175 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 BAMBIQ13145 260 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 GNMTQ14749 295 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 SGPP2Q8IWX5 399 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 C8orf31Q8N9H6 132 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 RTBDNQ9BSG5 229 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-209ENST00000597423 C5orf66Q9H5L9 145 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 METTL8Q9H825 291 aaKnown RBP12.53□□□□□ -0.4
TRIM28-209ENST00000597423 HEXA-AS1Q9H8Q6 139 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 KCNS2Q9ULS6 477 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 GAB2Q9UQC2 676 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 KPTNQ9Y664 436 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 SPG11Q96JI7 2443 aa12.52□□□□□ -0.4
TRIM28-209ENST00000597423 PIGBOS1A0A0B4J2F0 54 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 IGHV2-70DA0A0C4DH43 119 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 RNF212BA8MTL3 300 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 VGLL3A8MV65 326 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 KIAA1324LA8MWY0 1029 aaPredicted RBP12.52□□□□□ -0.41
TRIM28-209ENST00000597423 HSD17B6O14756 317 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 OR4E1P0C645 316 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 ANXA3P12429 323 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 ZFP36P26651 326 aaKnown RBP12.52□□□□□ -0.41
TRIM28-209ENST00000597423 GNRHRP30968 328 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 GPR12P47775 334 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 PIGPP57054 158 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 RND3P61587 244 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 ARF6P62330 175 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 GLDNQ6ZMI3 551 aaPredicted RBP12.52□□□□□ -0.41
TRIM28-209ENST00000597423 ZNF645Q8N7E2 425 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 BVESQ8NE79 360 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 OR13D1Q8NGV5 346 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 OR9G1Q8NH87 305 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 TNFRSF14Q92956 283 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 FOXC2Q99958 501 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 ABHD14AQ9BUJ0 271 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 SUCNR1Q9BXA5 334 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 BEX2Q9BXY8 128 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 FXYD6Q9H0Q3 95 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 TMEM133Q9H2Q1 129 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 BEX1Q9HBH7 125 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 CCL28Q9NRJ3 127 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 PIPOXQ9P0Z9 390 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 PSG11Q9UQ72 335 aa12.52□□□□□ -0.41
TRIM28-209ENST00000597423 GCN1Q92616 2671 aaKnown RBP12.52□□□□□ -0.41
TRIM28-209ENST00000597423 A0A087X0M5 115 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 A0A1B0GX30 115 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 B4DSR2 109 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 RAB29O14966 203 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 CREBL2O60519 120 aaPredicted RBP12.51□□□□□ -0.41
TRIM28-209ENST00000597423 B3GALNT1O75752 331 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 PI3P19957 117 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 PRTN3P24158 256 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 IL3RAP26951 378 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 LOXL1Q08397 574 aaPredicted RBP12.51□□□□□ -0.41
TRIM28-209ENST00000597423 PHLDA2Q53GA4 152 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 KCTD9Q7L273 389 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 ABHD12Q8N2K0 398 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.51□□□□□ -0.41
TRIM28-209ENST00000597423 RTN4IP1Q8WWV3 396 aaPredicted RBP12.51□□□□□ -0.41
TRIM28-209ENST00000597423 REG4Q9BYZ8 158 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 OR2D2Q9H210 308 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 RNF150Q9ULK6 438 aa12.51□□□□□ -0.41
TRIM28-209ENST00000597423 IGKV1D-13A0A0B4J2D9 117 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 MPPED1O15442 326 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 MMP23AO75900 390 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 IGKV1-13P0DP09 117 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 VAMP1P23763 118 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 GATA3P23771 443 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 CD34P28906 385 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 DVL1P1P54792 670 aaPredicted RBP12.5□□□□□ -0.41
TRIM28-209ENST00000597423 DHODHQ02127 395 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 CBX3Q13185 183 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 CT45A1Q5HYN5 189 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 NCR3LG1Q68D85 454 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 C11orf42Q8N5U0 333 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 LINC00311Q8N616 119 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 ADAD2Q8NCV1 583 aaKnown RBP12.5□□□□□ -0.41
TRIM28-209ENST00000597423 CT45A3Q8NHU0 189 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 ZNF596Q8TC21 504 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 ZNF431Q8TF32 576 aaPredicted RBP12.5□□□□□ -0.41
TRIM28-209ENST00000597423 S1PR3Q99500 378 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 CLEC7AQ9BXN2 247 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 OR51J1Q9H342 316 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 SLC2A9Q9NRM0 540 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 ALG5Q9Y673 324 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 ARID1AO14497 2285 aa12.5□□□□□ -0.41
TRIM28-209ENST00000597423 hCG_2014768A0A024R1R8 64 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 A0A0A6YYJ9 748 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 TRAV20A0A0B4J274 112 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 C7orf66A4D0T2 115 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 CRYM-AS1A6NIL9 109 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 FAM157AC9JC47 383 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 J3QR06 171 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 ST8SIA5O15466 376 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 SSNA1O43805 119 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 PGLYRP1O75594 196 aaPredicted RBP12.49□□□□□ -0.41
TRIM28-209ENST00000597423 SFT2D2O95562 160 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 IFNA2P01563 188 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 HLA-AP01891 365 aaKnown RBP12.49□□□□□ -0.41
TRIM28-209ENST00000597423 MSMBP08118 114 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms