RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 NKX2-5P52952 324 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 CRISP3P54108 245 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 WNT4P56705 351 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ARG2P78540 354 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 RPL19P84098 196 aaKnown RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 DEFA6Q01524 100 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 PRKCDQ05655 676 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 MED21Q13503 144 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 RBMY1FQ15415 496 aaKnown RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TAF1AQ15573 450 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TRAM1Q15629 374 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TRIP13Q15645 432 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TOMM34Q15785 309 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 PRSS8Q16651 343 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TMEM249Q2WGJ8 235 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TMEM255AQ5JRV8 349 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 CLLU1OSQ5K130 101 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 RBM48Q5RL73 367 aaKnown RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 IDNKQ5T6J7 187 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 SYT6Q5T7P8 510 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 OGFRL1Q5TC84 451 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 SDHAF4Q5VUM1 108 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 HBMQ6B0K9 141 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 RPL13AP3Q6NVV1 102 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 C5orf46Q6UWT4 87 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 S100A7AQ86SG5 101 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 OR51Q1Q8NH59 317 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 OR10G6Q8NH81 332 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 OR10J5Q8NHC4 309 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 COQ8AQ8NI60 647 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 NT5CQ8TCD5 201 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 PIFOQ8TCI5 191 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 RNASEH2CQ8TDP1 164 aaKnown RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ABHD3Q8WU67 409 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TMEM158Q8WZ71 300 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 OR5P2Q8WZ92 322 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 RERGQ96A58 199 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 SLC35E1Q96K37 410 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 IMMP1LQ96LU5 166 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ZNF488Q96MN9 340 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TIMM17AQ99595 171 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 NRTNQ99748 197 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 PRRT1Q99946 306 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 SEC22CQ9BRL7 303 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ZNF2Q9BSG1 426 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TMEM243Q9BU79 118 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ALX4Q9H161 411 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 DSN1Q9H410 356 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ASB7Q9H672 318 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ZNF430Q9H8G1 570 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 WDR54Q9H977 334 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 NANOGQ9H9S0 305 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ZDHHC4Q9NPG8 344 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TMEM138Q9NPI0 162 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 DDIT4Q9NX09 232 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 FBXL3Q9UKT7 428 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TFR2Q9UP52 801 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 SNX24Q9Y343 169 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 KNTC1P50748 2209 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 MGAQ8IWI9 3026 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 LCTP09848 1927 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TICRRQ7Z2Z1 1910 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 NF1P21359 2839 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 NID2Q14112 1375 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 MIA3Q5JRA6 1907 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 IGLV11-55A0A075B6I3 123 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 A0A1B0GX12 115 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 MYBPHLA2RUH7 354 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 ZNF233A6NK53 670 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 TSTD3H0UI37 97 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 H0Y980 276 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 DNASE2O00115 360 aaPredicted RBP2.02□□□□□ -2.09
VPS4B-203ENST00000588323 CDIPTO14735 213 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 CRXO43186 299 aaPredicted RBP2.02□□□□□ -2.09
VPS4B-203ENST00000588323 TGOLN2O43493 480 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 CHP2O43745 196 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 SS18L1O75177 396 aaPredicted RBP2.02□□□□□ -2.09
VPS4B-203ENST00000588323 MED6O75586 246 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 BCHEP06276 602 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 GUSBP08236 651 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 CD36P16671 472 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 CXCR1P25024 350 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 PAX6P26367 422 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 RPA3P35244 121 aaPredicted RBP2.02□□□□□ -2.09
VPS4B-203ENST00000588323 UBE2AP49459 152 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 PPOXP50336 477 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 RPL14P50914 215 aaKnown RBP2.02□□□□□ -2.09
VPS4B-203ENST00000588323 ZNF136P52737 540 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 AQP5P55064 265 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 RAB38P57729 211 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 OR4D2P58180 307 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 OR10A3P58181 314 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 GNG2P59768 71 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 RPL23P62829 140 aaKnown RBP2.02□□□□□ -2.09
VPS4B-203ENST00000588323 GNB2P62879 340 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 AESQ08117 197 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 INCA1Q0VD86 236 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 ERCC8Q13216 396 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 IRF4Q15306 451 aa2.02□□□□□ -2.09
VPS4B-203ENST00000588323 IMPG1Q17R60 797 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms