RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ARID1AO14497 2285 aa12.55□□□□□ -0.4
SS18-215ENST00000580642 MALRD1Q5VYJ5 2156 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 NAV2Q8IVL1 2488 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 FBN2P35556 2912 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 IGHV2-70DA0A0C4DH43 119 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 CCL3L1P16619 93 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 GATA3P23771 443 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 PRTN3P24158 256 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 GNRHRP30968 328 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 PPP1CCP36873 323 aaKnown RBP12.54□□□□□ -0.4
SS18-215ENST00000580642 FXYD4P59646 89 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 ABCA11PQ4W5N1 156 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 Q5PR19 223 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 HIST2H2BCQ6DN03 193 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 GLDNQ6ZMI3 551 aaPredicted RBP12.54□□□□□ -0.4
SS18-215ENST00000580642 ZNF645Q8N7E2 425 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 ZNF439Q8NDP4 499 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 TOMM40LQ969M1 308 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 AGMATQ9BSE5 352 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 PIPOXQ9P0Z9 390 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 FLVCR2Q9UPI3 526 aa12.54□□□□□ -0.4
SS18-215ENST00000580642 RBM7Q9Y580 266 aaKnown RBP12.54□□□□□ -0.4
SS18-215ENST00000580642 B4DSR2 109 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 OR4E1P0C645 316 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 OR8U9P0C7N5 309 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 ANXA3P12429 323 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 ZFP36P26651 326 aaKnown RBP12.53□□□□□ -0.4
SS18-215ENST00000580642 GNMTQ14749 295 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 PRAMEF5Q5TYX0 476 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 FAM71F2Q6NXP2 309 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 SLC25A48Q6ZT89 311 aaKnown RBP12.53□□□□□ -0.4
SS18-215ENST00000580642 C5orf24Q7Z6I8 188 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 TMED4Q7Z7H5 227 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 LDLRAD3Q86YD5 345 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 TCTEX1D1Q8N7M0 179 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 OR8U1Q8NH10 309 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 OR9G1Q8NH87 305 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 UBALD1Q8TB05 177 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 SECTM1Q8WVN6 248 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 GALNT14Q96FL9 552 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 ABHD14AQ9BUJ0 271 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 TMEM133Q9H2Q1 129 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 HEXA-AS1Q9H8Q6 139 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 SLC2A9Q9NRM0 540 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 KCNIP3Q9Y2W7 256 aa12.53□□□□□ -0.4
SS18-215ENST00000580642 DSCAML1Q8TD84 2053 aa12.52□□□□□ -0.4
SS18-215ENST00000580642 A0A096LNT2 108 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 A0A0B4J2A0 478 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 IGKV1D-13A0A0B4J2D9 117 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 RNF212BA8MTL3 300 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 RAB29O14966 203 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 CREBL2O60519 120 aaPredicted RBP12.52□□□□□ -0.41
SS18-215ENST00000580642 IGKV1-13P0DP09 117 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 ANXA7P20073 488 aaKnown RBP12.52□□□□□ -0.41
SS18-215ENST00000580642 OMGP23515 440 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 NFYBP25208 207 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 PIGPP57054 158 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 NCR3LG1Q68D85 454 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 SGPP2Q8IWX5 399 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 BEND2Q8NDZ0 799 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 OR13D1Q8NGV5 346 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 RTN4IP1Q8WWV3 396 aaPredicted RBP12.52□□□□□ -0.41
SS18-215ENST00000580642 FAM212BQ9NTI7 297 aaPredicted RBP12.52□□□□□ -0.41
SS18-215ENST00000580642 SHPKQ9UHJ6 478 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 ZNF221Q9UK13 617 aa12.52□□□□□ -0.41
SS18-215ENST00000580642 CRYBG3Q68DQ2 2970 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 TRAV20A0A0B4J274 112 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 CRYM-AS1A6NIL9 109 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 DUS4LO95620 317 aaKnown RBP12.51□□□□□ -0.41
SS18-215ENST00000580642 TRAPPC2P0DI81 140 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 TRAPPC2BP0DI82 140 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 ZNF137PP52743 207 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 DVL1P1P54792 670 aaPredicted RBP12.51□□□□□ -0.41
SS18-215ENST00000580642 PRRX1P54821 245 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 LTC4SQ16873 150 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 C4orf46Q504U0 113 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 CT45A1Q5HYN5 189 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 ZNF626Q68DY1 528 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 ZNF66Q6ZN08 573 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 LYG2Q86SG7 212 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 CT45A3Q8NHU0 189 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 ZNF431Q8TF32 576 aaPredicted RBP12.51□□□□□ -0.41
SS18-215ENST00000580642 CHAC2Q8WUX2 184 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 HSD17B10Q99714 261 aaKnown RBP12.51□□□□□ -0.41
SS18-215ENST00000580642 IFI27L2Q9H2X8 130 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 CCL28Q9NRJ3 127 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 ONECUT1Q9UBC0 465 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 PSG11Q9UQ72 335 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 CELSR2Q9HCU4 2923 aa12.51□□□□□ -0.41
SS18-215ENST00000580642 A0A0A6YYJ9 748 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 IGHV3-43A0A0B4J1X8 118 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 MEX3AA1L020 520 aaKnown RBP12.5□□□□□ -0.41
SS18-215ENST00000580642 C9orf170A2RU37 121 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 J3QR06 171 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 MPPED1O15442 326 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 MMP23AO75900 390 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 SFT2D2O95562 160 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 IGLV2-14P01704 120 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 MSMBP08118 114 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 IGHV3-43DP0DP04 118 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms