RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 LDLRAD4O15165 306 aa18.98■□□□□ 0.63
SHMT1-206ENST00000579558 YPEL1O60688 119 aa18.98■□□□□ 0.63
SHMT1-206ENST00000579558 CD1BP29016 333 aa18.98■□□□□ 0.63
SHMT1-206ENST00000579558 TMEM50BP56557 158 aa18.98■□□□□ 0.63
SHMT1-206ENST00000579558 ARHGAP5-AS1Q96IT6 56 aa18.98■□□□□ 0.63
SHMT1-206ENST00000579558 YPEL2Q96QA6 119 aa18.98■□□□□ 0.63
SHMT1-206ENST00000579558 PECRQ9BY49 303 aa18.98■□□□□ 0.63
SHMT1-206ENST00000579558 RAB22AQ9UL26 194 aa18.98■□□□□ 0.63
SHMT1-206ENST00000579558 TRBV6-6A0A0A6YYG2 114 aa18.97■□□□□ 0.63
SHMT1-206ENST00000579558 IFITM5A6NNB3 132 aa18.97■□□□□ 0.63
SHMT1-206ENST00000579558 LANCL1O43813 399 aa18.97■□□□□ 0.63
SHMT1-206ENST00000579558 PLA2G7Q13093 441 aa18.97■□□□□ 0.63
SHMT1-206ENST00000579558 NCBP2LA6PVI3 153 aaKnown RBP18.96■□□□□ 0.63
SHMT1-206ENST00000579558 ZNF736B4DX44 427 aaPredicted RBP18.96■□□□□ 0.63
SHMT1-206ENST00000579558 LY6G6FQ5SQ64 297 aa18.96■□□□□ 0.63
SHMT1-206ENST00000579558 Q8N6K4 173 aa18.96■□□□□ 0.63
SHMT1-206ENST00000579558 C12orf4Q9NQ89 552 aa18.96■□□□□ 0.63
SHMT1-206ENST00000579558 STUB1Q9UNE7 303 aa18.96■□□□□ 0.63
SHMT1-206ENST00000579558 MOSP00540 346 aa18.95■□□□□ 0.62
SHMT1-206ENST00000579558 CD83Q01151 205 aa18.95■□□□□ 0.62
SHMT1-206ENST00000579558 PLAC9Q5JTB6 97 aa18.95■□□□□ 0.62
SHMT1-206ENST00000579558 OR2AK2Q8NG84 335 aa18.95■□□□□ 0.62
SHMT1-206ENST00000579558 CMSS1Q9BQ75 279 aaKnown RBP18.95■□□□□ 0.62
SHMT1-206ENST00000579558 TXNL4BQ9NX01 149 aaKnown RBP18.95■□□□□ 0.62
SHMT1-206ENST00000579558 MGAT4AQ9UM21 535 aa18.95■□□□□ 0.62
SHMT1-206ENST00000579558 SMIM30A4D0T7 59 aa18.94■□□□□ 0.62
SHMT1-206ENST00000579558 ADARB2-AS1A8MUL3 147 aa18.94■□□□□ 0.62
SHMT1-206ENST00000579558 OPN1MWP04001 364 aa18.94■□□□□ 0.62
SHMT1-206ENST00000579558 OPN1MW2P0DN77 364 aa18.94■□□□□ 0.62
SHMT1-206ENST00000579558 OPN1MW3P0DN78 364 aa18.94■□□□□ 0.62
SHMT1-206ENST00000579558 FGF9P31371 208 aaPredicted RBP18.94■□□□□ 0.62
SHMT1-206ENST00000579558 HLA-DRB3P79483 266 aa18.94■□□□□ 0.62
SHMT1-206ENST00000579558 DEFA6Q01524 100 aa18.94■□□□□ 0.62
SHMT1-206ENST00000579558 ODF3L1Q8IXM7 274 aa18.94■□□□□ 0.62
SHMT1-206ENST00000579558 OR4X2Q8NGF9 303 aa18.94■□□□□ 0.62
SHMT1-206ENST00000579558 R3HDM4Q96D70 268 aa18.94■□□□□ 0.62
SHMT1-206ENST00000579558 SSR3Q9UNL2 185 aa18.94■□□□□ 0.62
SHMT1-206ENST00000579558 A0A0B4J203 849 aa18.93■□□□□ 0.62
SHMT1-206ENST00000579558 A0A1W2PRX2 142 aa18.93■□□□□ 0.62
SHMT1-206ENST00000579558 LSAMPQ13449 338 aa18.93■□□□□ 0.62
SHMT1-206ENST00000579558 C10orf99Q6UWK7 81 aa18.93■□□□□ 0.62
SHMT1-206ENST00000579558 NR2C2APQ86WQ0 139 aa18.93■□□□□ 0.62
SHMT1-206ENST00000579558 Q8N9W7 124 aa18.93■□□□□ 0.62
SHMT1-206ENST00000579558 OR4F17Q8NGA8 305 aa18.93■□□□□ 0.62
SHMT1-206ENST00000579558 RAB3CQ96E17 227 aa18.93■□□□□ 0.62
SHMT1-206ENST00000579558 OR4F4Q96R69 305 aa18.93■□□□□ 0.62
SHMT1-206ENST00000579558 Q9N2K0 584 aa18.93■□□□□ 0.62
SHMT1-206ENST00000579558 TCRBV4S1A1TA0A5B7 111 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 PSMB11A5LHX3 300 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 SERPINE3A8MV23 424 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 ST8SIA5O15466 376 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 RAB6AP20340 208 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 OR3A3P47888 321 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 MOGAT2Q3SYC2 334 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 KCTD21Q4G0X4 260 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 TCTEX1D4Q5JR98 221 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 SLC35E3Q7Z769 313 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 RBMXL1Q96E39 390 aaKnown RBP18.92■□□□□ 0.62
SHMT1-206ENST00000579558 MRPL20Q9BYC9 149 aaKnown RBP18.92■□□□□ 0.62
SHMT1-206ENST00000579558 IFI27L2Q9H2X8 130 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 LIN7CQ9NUP9 197 aaKnown RBP18.92■□□□□ 0.62
SHMT1-206ENST00000579558 SLC23A1Q9UHI7 598 aa18.92■□□□□ 0.62
SHMT1-206ENST00000579558 SAA2-SAA4A0A096LPE2 208 aa18.91■□□□□ 0.62
SHMT1-206ENST00000579558 IGHG2P01859 326 aa18.91■□□□□ 0.62
SHMT1-206ENST00000579558 SAA2P0DJI9 122 aaPredicted RBP18.91■□□□□ 0.62
SHMT1-206ENST00000579558 SLC2A2P11168 524 aaPredicted RBP18.91■□□□□ 0.62
SHMT1-206ENST00000579558 GADD45AP24522 165 aa18.91■□□□□ 0.62
SHMT1-206ENST00000579558 MRPS15P82914 257 aaKnown RBP18.91■□□□□ 0.62
SHMT1-206ENST00000579558 ZNF833PQ6ZTB9 187 aa18.91■□□□□ 0.62
SHMT1-206ENST00000579558 OR8H1Q8NGG4 311 aa18.91■□□□□ 0.62
SHMT1-206ENST00000579558 OR10R2Q8NGX6 335 aa18.91■□□□□ 0.62
SHMT1-206ENST00000579558 CHPT1Q8WUD6 406 aa18.91■□□□□ 0.62
SHMT1-206ENST00000579558 NOL4LQ96MY1 436 aaPredicted RBP18.91■□□□□ 0.62
SHMT1-206ENST00000579558 S1PR3Q99500 378 aa18.91■□□□□ 0.62
SHMT1-206ENST00000579558 NABP2Q9BQ15 211 aa18.91■□□□□ 0.62
SHMT1-206ENST00000579558 PLSCR3Q9NRY6 295 aa18.91■□□□□ 0.62
SHMT1-206ENST00000579558 NOTOA8MTQ0 251 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 HSPA12AO43301 675 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 KCNAB3O43448 404 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 SCTP09683 121 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 CD3GP09693 182 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 NEDD8Q15843 81 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 KHDC1LQ5JSQ8 128 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 FOXRED2Q8IWF2 684 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 RASL11BQ9BPW5 248 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 PARP12Q9H0J9 701 aaKnown RBP18.9■□□□□ 0.62
SHMT1-206ENST00000579558 ABCG5Q9H222 651 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 OR51E2Q9H255 320 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 PIPOXQ9P0Z9 390 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 OR1A1Q9P1Q5 309 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 KCNK7Q9Y2U2 307 aa18.9■□□□□ 0.62
SHMT1-206ENST00000579558 TSSC4Q9Y5U2 329 aaPredicted RBP18.9■□□□□ 0.62
SHMT1-206ENST00000579558 METTL21EPA6NDL7 271 aa18.89■□□□□ 0.61
SHMT1-206ENST00000579558 ZBTB25P24278 435 aa18.89■□□□□ 0.61
SHMT1-206ENST00000579558 CEACAM6P40199 344 aa18.89■□□□□ 0.61
SHMT1-206ENST00000579558 F2RL1P55085 397 aa18.89■□□□□ 0.61
SHMT1-206ENST00000579558 ZNF329Q86UD4 541 aa18.89■□□□□ 0.61
SHMT1-206ENST00000579558 TPRA1Q86W33 373 aa18.89■□□□□ 0.61
SHMT1-206ENST00000579558 C1QL4Q86Z23 238 aa18.89■□□□□ 0.61
SHMT1-206ENST00000579558 PTX4Q96A99 478 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms