RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 MRGPRFQ96AM1 343 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 MOB3AQ96BX8 217 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 GALMQ96C23 342 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 SNX22Q96L94 193 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 JMJD8Q96S16 334 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 C5orf66Q9H5L9 145 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 A0A0B4J2A0 478 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 MGST3O14880 152 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 TMPRSS2O15393 492 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 SPINT2O43291 252 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 RGS11O94810 467 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 SFT2D2O95562 160 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 AVPP01185 164 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 LHBP01229 141 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 SCTP09683 121 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 PSG2P11465 335 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 RCC1P18754 421 aaPredicted RBP8.42□□□□□ -1.06
SS18-207ENST00000577636 C4BPBP20851 252 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 AADACP22760 399 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 NFYAP23511 347 aaPredicted RBP8.42□□□□□ -1.06
SS18-207ENST00000577636 CD80P33681 288 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 SRPXP78539 464 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 CYCSP99999 105 aaKnown RBP8.42□□□□□ -1.06
SS18-207ENST00000577636 DHODHQ02127 395 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 FGL1Q08830 312 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 ZNF660Q6AZW8 331 aaPredicted RBP8.42□□□□□ -1.06
SS18-207ENST00000577636 NLRC3Q7RTR2 1065 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 GAPTQ8N292 157 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 OR2T35Q8NGX2 323 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 C22orf15Q8WYQ4 148 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 CYYR1Q96J86 154 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 RTBDNQ9BSG5 229 aaPredicted RBP8.42□□□□□ -1.06
SS18-207ENST00000577636 CABLES2Q9BTV7 478 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 TMPRSS13Q9BYE2 586 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 METTL8Q9H825 291 aaKnown RBP8.42□□□□□ -1.06
SS18-207ENST00000577636 TAF9BQ9HBM6 251 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 COMMD9Q9P000 198 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 SHPKQ9UHJ6 478 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 KIF25Q9UIL4 384 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 BOLA1Q9Y3E2 137 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 PPIAL4AQ9Y536 164 aa8.42□□□□□ -1.06
SS18-207ENST00000577636 RBM7Q9Y580 266 aaKnown RBP8.42□□□□□ -1.06
SS18-207ENST00000577636 TRBV6-7A0A0A0MS04 114 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 TRAV38-1A0A0B4J264 116 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 FAM25EA8MYX2 175 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 NPIPB11E5RHQ5 1161 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 C3orf80F5H4A9 247 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 PSPNO60542 156 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 CYB5R3P00387 301 aaPredicted RBP8.41□□□□□ -1.06
SS18-207ENST00000577636 IFNA21P01568 189 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 PI3P19957 117 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 GZMHP20718 246 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 OR3A1P47881 315 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 LUMP51884 338 aaPredicted RBP8.41□□□□□ -1.06
SS18-207ENST00000577636 PIGPP57054 158 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 PAX5Q02548 391 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 AESQ08117 197 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 EDDM3AQ14507 147 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 SLC9A3R2Q15599 337 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 HFEQ30201 348 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 AVPI1Q5T686 147 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 GSG1LQ6UXU4 331 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 C1orf229Q6ZS94 237 aaPredicted RBP8.41□□□□□ -1.06
SS18-207ENST00000577636 PRR18Q8N4B5 295 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 CD177Q8N6Q3 437 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 SECTM1Q8WVN6 248 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 RTN4IP1Q8WWV3 396 aaPredicted RBP8.41□□□□□ -1.06
SS18-207ENST00000577636 RSRP1Q9BUV0 290 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 SUCNR1Q9BXA5 334 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 SLC5A7Q9GZV3 580 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 FXYD6Q9H0Q3 95 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 FAM234AQ9H0X4 552 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 ZNF665Q9H7R5 613 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 MBNL3Q9NUK0 354 aaKnown RBP8.41□□□□□ -1.06
SS18-207ENST00000577636 OR6C3Q9NZP0 311 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 OPN4Q9UHM6 478 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 OR2W1Q9Y3N9 320 aa8.41□□□□□ -1.06
SS18-207ENST00000577636 IGKV1D-17A0A075B6S4 117 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 PPIAL4EA0A075B759 164 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 IGHV3OR15-7A0A075B7D8 119 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 TRAV20A0A0B4J274 112 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 C13orf42A0A1B0GVH6 325 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 C5orf51A6NDU8 294 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 CRYM-AS1A6NIL9 109 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 PPIAL4DF5H284 164 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 K7N7A8 449 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 LGALS8O00214 317 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 GPR31O00270 319 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 B3GALNT1O75752 331 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 OR2A4O95047 310 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 PPIAL4FP0DN26 164 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 NKX2-5P52952 324 aaPredicted RBP8.4□□□□□ -1.06
SS18-207ENST00000577636 P2RX3P56373 397 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 EDDM3BP56851 147 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 TMEM33P57088 247 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 LMO4P61968 165 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 HMGN3Q15651 99 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 MIDNQ504T8 468 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 PRR31Q5SQ13 230 aa8.4□□□□□ -1.06
SS18-207ENST00000577636 TEX36Q5VZQ5 186 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms