RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SERF1AO75920 110 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 NSA2O95478 260 aaKnown RBP4.18□□□□□ -1.74
VPS53-219ENST00000576019 IGHV3-13P01766 116 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 APOEP02649 317 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 BCHEP06276 602 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 MMP7P09237 267 aaPredicted RBP4.18□□□□□ -1.74
VPS53-219ENST00000576019 RAB3AP20336 220 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 RPS24P62847 133 aaKnown RBP4.18□□□□□ -1.74
VPS53-219ENST00000576019 TTLL9Q3SXZ7 439 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 TTC32Q5I0X7 151 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 KDM4DQ6B0I6 523 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 RNF165Q6ZSG1 346 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 STX12Q86Y82 276 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 ZFP82Q8N141 532 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 LGI3Q8N145 548 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 KLHL30-AS1Q8NEE0 82 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 OR10G9Q8NGN4 311 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 SYNPRQ8TBG9 265 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 PIFOQ8TCI5 191 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 PSMF1Q92530 271 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 MARC2Q969Z3 335 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 NTAN1Q96AB6 310 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 DGCR14Q96DF8 476 aaKnown RBP4.18□□□□□ -1.74
VPS53-219ENST00000576019 SMIM19Q96E16 107 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 SEH1LQ96EE3 360 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 LINC00479Q96M42 142 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 TMEM208Q9BTX3 173 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 TMED9Q9BVK6 235 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 TAPBPLQ9BX59 468 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 SLC25A2Q9BXI2 301 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 SPNS1Q9H2V7 528 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 TRIM45Q9H8W5 580 aaPredicted RBP4.18□□□□□ -1.74
VPS53-219ENST00000576019 RBFOX1Q9NWB1 397 aaKnown RBP4.18□□□□□ -1.74
VPS53-219ENST00000576019 GUCA1BQ9UMX6 200 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 IGHV1-69DA0A0B4J2H0 117 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 A0A1W2PQL4 384 aaPredicted RBP4.17□□□□□ -1.74
VPS53-219ENST00000576019 A0A1W2PRG6 482 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 NDUFAF8A1L188 74 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 RBFOX3A6NFN3 312 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 M0R036 132 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 PEX7O00628 323 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 SYNGR1O43759 233 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 SEMA3DO95025 777 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 TYMSP04818 313 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 CELP19835 753 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 HSD11B1P28845 292 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 TSPOP30536 169 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 SRP14P37108 136 aaKnown RBP4.17□□□□□ -1.74
VPS53-219ENST00000576019 P2RY4P51582 365 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 CDKN2DP55273 166 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 DR1Q01658 176 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 INCA1Q0VD86 236 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 C4orf26Q17RF5 130 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 CEACAM16Q2WEN9 425 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 OGFRL1Q5TC84 451 aaPredicted RBP4.17□□□□□ -1.74
VPS53-219ENST00000576019 FBXW9Q5XUX1 488 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 FAM92BQ6ZTR7 304 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 C10orf67Q8IYJ2 551 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 UBAC2Q8NBM4 344 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 ZNF418Q8TF45 676 aaPredicted RBP4.17□□□□□ -1.74
VPS53-219ENST00000576019 NELFBQ8WX92 580 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 ATOH8Q96SQ7 321 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 SOSTQ9BQB4 213 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 PAXXQ9BUH6 204 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 MRPS26Q9BYN8 205 aaKnown RBP4.17□□□□□ -1.74
VPS53-219ENST00000576019 TOLLIPQ9H0E2 274 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 TMEM27Q9HBJ8 222 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 PCYOX1Q9UHG3 505 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 RAB22AQ9UL26 194 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 TRAPPC4Q9Y296 219 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 FAM215AQ9Y5M1 114 aa4.17□□□□□ -1.74
VPS53-219ENST00000576019 HUWE1Q7Z6Z7 4374 aaKnown RBP4.16□□□□□ -1.74
VPS53-219ENST00000576019 PKHD1P08F94 4074 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 HSPG2P98160 4391 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 TRAV8-6A0A0B4J262 113 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 IGKV1-8A0A0C4DH67 115 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 DEFB108AA8MXU0 73 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 KRTAP4-16G5E9R7 235 aaPredicted RBP4.16□□□□□ -1.74
VPS53-219ENST00000576019 CCRL2O00421 344 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 AZIN1O14977 448 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 SSNA1O43805 119 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 DHRS3O75911 302 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 CTDNEP1O95476 244 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 ASS1P00966 412 aaKnown RBP4.16□□□□□ -1.74
VPS53-219ENST00000576019 BGLAPP02818 100 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 CALB1P05937 261 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 FOLR2P14207 255 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 PSMB1P20618 241 aaKnown RBP4.16□□□□□ -1.74
VPS53-219ENST00000576019 CXCR1P25024 350 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 IDH2P48735 452 aaKnown RBP4.16□□□□□ -1.74
VPS53-219ENST00000576019 TTPAP49638 278 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 GDI2P50395 445 aaKnown RBP4.16□□□□□ -1.74
VPS53-219ENST00000576019 UBE2NP61088 152 aaKnown RBP4.16□□□□□ -1.74
VPS53-219ENST00000576019 GLO1Q04760 184 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 TOMM34Q15785 309 aaPredicted RBP4.16□□□□□ -1.74
VPS53-219ENST00000576019 TMEM236Q5W0B7 351 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 DNM1P34Q6PK57 102 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 ITPRIPQ8IWB1 547 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 ACTRT1Q8TDG2 376 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 BLNKQ8WV28 456 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms