RNA–Protein interactions for RNA: ENST00000574099.1

CCDC40-211, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 537 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-211ENST00000574099 CNOT2Q9NZN8 540 aaKnown RBP13.38□□□□□ -0.27
CCDC40-211ENST00000574099 NUBP2Q9Y5Y2 271 aa13.38□□□□□ -0.27
CCDC40-211ENST00000574099 SAA2-SAA4A0A096LPE2 208 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 RBMY1BA6NDE4 496 aaKnown RBP13.37□□□□□ -0.27
CCDC40-211ENST00000574099 RBMY1EA6NEQ0 496 aaKnown RBP13.37□□□□□ -0.27
CCDC40-211ENST00000574099 FCN1O00602 326 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 TRGV3P03979 118 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 RBMY1DP0C7P1 496 aaKnown RBP13.37□□□□□ -0.27
CCDC40-211ENST00000574099 SAA2P0DJI9 122 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-211ENST00000574099 PPP3R1P63098 170 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 RAB40BQ12829 278 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 RAB12Q6IQ22 244 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 ZNF833PQ6ZTB9 187 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 PPP1R27Q86WC6 154 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 SYS1Q8N2H4 156 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 ORAI1Q96D31 301 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 MRPS24Q96EL2 167 aaKnown RBP13.37□□□□□ -0.27
CCDC40-211ENST00000574099 CLCC1Q96S66 551 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 HIPK2Q9H2X6 1198 aa13.37□□□□□ -0.27
CCDC40-211ENST00000574099 PAK1IP1Q9NWT1 392 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-211ENST00000574099 RCC2Q9P258 522 aaKnown RBP13.37□□□□□ -0.27
CCDC40-211ENST00000574099 EXOGQ9Y2C4 368 aaKnown RBP13.37□□□□□ -0.27
CCDC40-211ENST00000574099 ANKRD34BA5PLL1 514 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 H0Y980 276 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 RRHO14718 337 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 RGS11O94810 467 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 GTF2F2P13984 249 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 GTF2A1P52655 376 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-211ENST00000574099 TMEM267Q0VDI3 215 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-211ENST00000574099 TRAT1Q6PIZ9 186 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 LFNGQ8NES3 379 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 TRUB1Q8WWH5 349 aaKnown RBP13.36□□□□□ -0.27
CCDC40-211ENST00000574099 LINC00476Q8WZB0 136 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 RDH12Q96NR8 316 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 PLEKHA3Q9HB20 300 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 TMEM138Q9NPI0 162 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 RNF150Q9ULK6 438 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 OAZ3Q9UMX2 235 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 CEPT1Q9Y6K0 416 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 FRAS1Q86XX4 4008 aa13.36□□□□□ -0.27
CCDC40-211ENST00000574099 SAC3D1A6NKF1 404 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 ARPC1BO15143 372 aaKnown RBP13.35□□□□□ -0.27
CCDC40-211ENST00000574099 CD2P06729 351 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 SNRPBP14678 240 aaKnown RBP13.35□□□□□ -0.27
CCDC40-211ENST00000574099 ZP3P21754 424 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 CD40LGP29965 261 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 BDKRB2P30411 391 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 GBX2P52951 348 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-211ENST00000574099 CD200R1LQ6Q8B3 271 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 GLDNQ6ZMI3 551 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-211ENST00000574099 OR9G4Q8NGQ1 327 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 TMEM106AQ96A25 262 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 THAP7Q9BT49 309 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-211ENST00000574099 SPACA1Q9HBV2 294 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 RANGRFQ9HD47 186 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-211ENST00000574099 ZNF355PQ9NSJ1 428 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 JPT1Q9UK76 154 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 PEX16Q9Y5Y5 336 aa13.35□□□□□ -0.27
CCDC40-211ENST00000574099 UBE2QL1A1L167 161 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 IZUMO1RA6ND01 250 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 SLC25A17O43808 307 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 ZNF780AO75290 641 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-211ENST00000574099 LY6G6CO95867 125 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 MAS1P04201 325 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 SYNJ2BPP57105 145 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 MEDAGQ5VYS4 303 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 GPR148Q8TDV2 347 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 ZNF184Q99676 751 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-211ENST00000574099 SLA2Q9H6Q3 261 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 ERVK13-1Q9NX77 482 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 KCNIP1Q9NZI2 227 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 ADAM30Q9UKF2 790 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 AP4S1Q9Y587 144 aa13.34□□□□□ -0.27
CCDC40-211ENST00000574099 C13orf42A0A1B0GVH6 325 aa13.33□□□□□ -0.28
CCDC40-211ENST00000574099 SNRPGP62308 76 aaKnown RBP13.33□□□□□ -0.28
CCDC40-211ENST00000574099 DEFA5Q01523 94 aa13.33□□□□□ -0.28
CCDC40-211ENST00000574099 MRPL28Q13084 256 aaKnown RBP13.33□□□□□ -0.28
CCDC40-211ENST00000574099 AKIRIN2Q53H80 203 aa13.33□□□□□ -0.28
CCDC40-211ENST00000574099 RNLSQ5VYX0 342 aa13.33□□□□□ -0.28
CCDC40-211ENST00000574099 XAF1Q6GPH4 301 aa13.33□□□□□ -0.28
CCDC40-211ENST00000574099 LCN12Q6JVE5 192 aa13.33□□□□□ -0.28
CCDC40-211ENST00000574099 IL34Q6ZMJ4 242 aa13.33□□□□□ -0.28
CCDC40-211ENST00000574099 GAPTQ8N292 157 aa13.33□□□□□ -0.28
CCDC40-211ENST00000574099 MYCBPQ99417 103 aaPredicted RBP13.33□□□□□ -0.28
CCDC40-211ENST00000574099 AMBNQ9NP70 447 aa13.33□□□□□ -0.28
CCDC40-211ENST00000574099 SHISA3A0PJX4 238 aa13.32□□□□□ -0.28
CCDC40-211ENST00000574099 SNTNA6NMZ2 147 aa13.32□□□□□ -0.28
CCDC40-211ENST00000574099 ST8SIA5O15466 376 aa13.32□□□□□ -0.28
CCDC40-211ENST00000574099 BRI3O95415 125 aa13.32□□□□□ -0.28
CCDC40-211ENST00000574099 CA2P00918 260 aa13.32□□□□□ -0.28
CCDC40-211ENST00000574099 TFAP2AP05549 437 aa13.32□□□□□ -0.28
CCDC40-211ENST00000574099 GSTP1P09211 210 aaKnown RBP13.32□□□□□ -0.28
CCDC40-211ENST00000574099 KLF5Q13887 457 aaPredicted RBP13.32□□□□□ -0.28
CCDC40-211ENST00000574099 ZIK1Q3SY52 487 aaPredicted RBP13.32□□□□□ -0.28
CCDC40-211ENST00000574099 RPL39P5Q59GN2 51 aa13.32□□□□□ -0.28
CCDC40-211ENST00000574099 SLC25A30Q5SVS4 291 aa13.32□□□□□ -0.28
CCDC40-211ENST00000574099 OR2AK2Q8NG84 335 aa13.32□□□□□ -0.28
CCDC40-211ENST00000574099 OR13C5Q8NGS8 318 aa13.32□□□□□ -0.28
CCDC40-211ENST00000574099 GRPEL2Q8TAA5 225 aa13.32□□□□□ -0.28
CCDC40-211ENST00000574099 MUL1Q969V5 352 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms