RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ERGIC3Q9Y282 383 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 TPRKBQ9Y3C4 175 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 PEX16Q9Y5Y5 336 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 WSB1Q9Y6I7 421 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 G3V318 75 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 HLA-DRB1P01911 266 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 GLAP06280 429 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 WNT4P56705 351 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 TAS2R43P59537 309 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 ACTBP60709 375 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 ZNF616Q08AN1 781 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 CDH26Q8IXH8 852 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 ODF3L1Q8IXM7 274 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 RITA1Q96K30 269 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 OR51J1Q9H342 316 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 OR2S2Q9NQN1 319 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 SMAD5-AS1Q9Y6J3 95 aa16.37■□□□□ 0.21
VPS53-216ENST00000574029 TRBV5-7A0A0A0MS05 114 aa16.36■□□□□ 0.21
VPS53-216ENST00000574029 MYL12BO14950 172 aa16.36■□□□□ 0.21
VPS53-216ENST00000574029 ATP6V0E1O15342 81 aa16.36■□□□□ 0.21
VPS53-216ENST00000574029 CD1AP06126 327 aa16.36■□□□□ 0.21
VPS53-216ENST00000574029 GNB1P62873 340 aa16.36■□□□□ 0.21
VPS53-216ENST00000574029 GNMTQ14749 295 aa16.36■□□□□ 0.21
VPS53-216ENST00000574029 ZNF554Q86TJ5 538 aa16.36■□□□□ 0.21
VPS53-216ENST00000574029 JAGN1Q8N5M9 183 aa16.36■□□□□ 0.21
VPS53-216ENST00000574029 PGLYRP3Q96LB9 341 aa16.36■□□□□ 0.21
VPS53-216ENST00000574029 ABHD14AQ9BUJ0 271 aa16.36■□□□□ 0.21
VPS53-216ENST00000574029 BANF2Q9H503 90 aa16.36■□□□□ 0.21
VPS53-216ENST00000574029 IGHV7-81A0A0B4J1V7 117 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 MGMTP16455 207 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 FUT3P21217 361 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 CRHBPP24387 322 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 CNTFRP26992 372 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 RAB9AP51151 201 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 IRF3Q14653 427 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 AWAT2Q6E213 333 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 SIGIRRQ6IA17 410 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 ZNF429Q86V71 674 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 LYPD6Q86Y78 171 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 OR52L2PQ8NGH6 319 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 CYYR1Q96J86 154 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 Q96M66 194 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 NABP2Q9BQ15 211 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 MRPL20Q9BYC9 149 aaKnown RBP16.35■□□□□ 0.21
VPS53-216ENST00000574029 SELENOIQ9C0D9 397 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 JPT1Q9UK76 154 aa16.35■□□□□ 0.21
VPS53-216ENST00000574029 TRAV41A0A0B4J266 112 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 UBE2QL1A1L167 161 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 NBR2O15453 112 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 LY86O95711 162 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 HTD2P86397 168 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 RBM48Q5RL73 367 aaKnown RBP16.34■□□□□ 0.21
VPS53-216ENST00000574029 LY6G6FQ5SQ64 297 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 ZNF833PQ6ZTB9 187 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 C5orf24Q7Z6I8 188 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 ZFP41Q8N8Y5 198 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 MINDY2Q8NBR6 621 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 NPBQ8NG41 125 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 MRPL30Q8TCC3 161 aaKnown RBP16.34■□□□□ 0.21
VPS53-216ENST00000574029 DCUN1D4Q92564 292 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 CNBD2Q96M20 576 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 OR5B12Q96R08 314 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 OR14A2Q96R54 314 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 ZNF251Q9BRH9 671 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 MND1Q9BWT6 205 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 PARP11Q9NR21 331 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 KCNIP1Q9NZI2 227 aa16.34■□□□□ 0.21
VPS53-216ENST00000574029 A0A1W2PPK0 400 aa16.33■□□□□ 0.2
VPS53-216ENST00000574029 DENRO43583 198 aaKnown RBP16.33■□□□□ 0.2
VPS53-216ENST00000574029 YPEL1O60688 119 aa16.33■□□□□ 0.2
VPS53-216ENST00000574029 BLVRBP30043 206 aaPredicted RBP16.33■□□□□ 0.2
VPS53-216ENST00000574029 PPP1CCP36873 323 aaKnown RBP16.33■□□□□ 0.2
VPS53-216ENST00000574029 DOC2BQ14184 412 aa16.33■□□□□ 0.2
VPS53-216ENST00000574029 C5orf64Q2M2E5 130 aa16.33■□□□□ 0.2
VPS53-216ENST00000574029 FAM27D1Q5T7N8 215 aa16.33■□□□□ 0.2
VPS53-216ENST00000574029 LIN54Q6MZP7 749 aa16.33■□□□□ 0.2
VPS53-216ENST00000574029 SBSPONQ8IVN8 264 aa16.33■□□□□ 0.2
VPS53-216ENST00000574029 YPEL2Q96QA6 119 aa16.33■□□□□ 0.2
VPS53-216ENST00000574029 LSM2Q9Y333 95 aaKnown RBP16.33■□□□□ 0.2
VPS53-216ENST00000574029 OVOL1O14753 267 aa16.32■□□□□ 0.2
VPS53-216ENST00000574029 CRTAPO75718 401 aaPredicted RBP16.32■□□□□ 0.2
VPS53-216ENST00000574029 NDUFA3O95167 84 aa16.32■□□□□ 0.2
VPS53-216ENST00000574029 MAS1P04201 325 aa16.32■□□□□ 0.2
VPS53-216ENST00000574029 C19orf54Q5BKX5 351 aa16.32■□□□□ 0.2
VPS53-216ENST00000574029 MUC7Q8TAX7 377 aa16.32■□□□□ 0.2
VPS53-216ENST00000574029 ISYNA1Q9NPH2 558 aa16.32■□□□□ 0.2
VPS53-216ENST00000574029 RGS10O43665 173 aa16.31■□□□□ 0.2
VPS53-216ENST00000574029 PDCD6O75340 191 aa16.31■□□□□ 0.2
VPS53-216ENST00000574029 CELP19835 753 aa16.31■□□□□ 0.2
VPS53-216ENST00000574029 OR3A3P47888 321 aa16.31■□□□□ 0.2
VPS53-216ENST00000574029 SPHARQ15513 63 aa16.31■□□□□ 0.2
VPS53-216ENST00000574029 CASC10Q5T4H9 136 aa16.31■□□□□ 0.2
VPS53-216ENST00000574029 PRSS48Q7RTY5 328 aa16.31■□□□□ 0.2
VPS53-216ENST00000574029 DERL3Q96Q80 235 aa16.31■□□□□ 0.2
VPS53-216ENST00000574029 Q9H521 79 aa16.31■□□□□ 0.2
VPS53-216ENST00000574029 SAA2-SAA4A0A096LPE2 208 aa16.3■□□□□ 0.2
VPS53-216ENST00000574029 RGS11O94810 467 aa16.3■□□□□ 0.2
VPS53-216ENST00000574029 SAA2P0DJI9 122 aaPredicted RBP16.3■□□□□ 0.2
VPS53-216ENST00000574029 CRIP2P52943 208 aaPredicted RBP16.3■□□□□ 0.2
VPS53-216ENST00000574029 NDPQ00604 133 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms