RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 HSPB9Q9BQS6 159 aa8.54□□□□□ -1.04
VPS53-207ENST00000570510 ALX4Q9H161 411 aaPredicted RBP8.54□□□□□ -1.04
VPS53-207ENST00000570510 METTL9Q9H1A3 318 aa8.54□□□□□ -1.04
VPS53-207ENST00000570510 ZNF107Q9UII5 783 aaPredicted RBP8.54□□□□□ -1.04
VPS53-207ENST00000570510 LSM2Q9Y333 95 aaKnown RBP8.54□□□□□ -1.04
VPS53-207ENST00000570510 IGKV1-12A0A0C4DH73 117 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 H0Y980 276 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 CA11O75493 328 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 LALBAP00709 142 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 IGKV1D-12P01611 117 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 CSTBP04080 98 aaKnown RBP8.53□□□□□ -1.04
VPS53-207ENST00000570510 IGF1P05019 195 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 SLC2A2P11168 524 aaPredicted RBP8.53□□□□□ -1.04
VPS53-207ENST00000570510 GTF2F2P13984 249 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 SNRPBP14678 240 aaKnown RBP8.53□□□□□ -1.04
VPS53-207ENST00000570510 MLLT11Q13015 90 aaPredicted RBP8.53□□□□□ -1.04
VPS53-207ENST00000570510 EBI3Q14213 229 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 ATXN7L3Q14CW9 347 aaPredicted RBP8.53□□□□□ -1.04
VPS53-207ENST00000570510 RSU1Q15404 277 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 C17orf58Q2M2W7 97 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 UTF1Q5T230 341 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 DDI2Q5TDH0 399 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 SLC16A12Q6ZSM3 486 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 OR10A7Q8NGE5 316 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 RFESDQ8TAC1 157 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 MYOZ3Q8TDC0 251 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 UFD1Q92890 307 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 BARHL1Q9BZE3 327 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 LINC00574Q9H8X3 128 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 RAB9BQ9NP90 201 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 TAS2R4Q9NYW5 299 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 CALYQ9NYX4 217 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 IDI2-AS1Q9NZ38 188 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 KIAA1456Q9P272 454 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 CEPT1Q9Y6K0 416 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 KIAA2026Q5HYC2 2103 aa8.53□□□□□ -1.04
VPS53-207ENST00000570510 ALMS1Q8TCU4 4167 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 MEIKINA0A087WXM9 373 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 A0A1W2PPE3 182 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 DEGS1O15121 323 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 ARL6IP5O75915 188 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 CPEP16870 476 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 IL3RAP26951 378 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 SOX2P48431 317 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 ZNF816Q0VGE8 651 aaPredicted RBP8.52□□□□□ -1.05
VPS53-207ENST00000570510 PMS2P11Q13670 270 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 TMEM30BQ3MIR4 351 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 Q6P435 159 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 IZUMO1Q8IYV9 350 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 SVOPQ8N4V2 548 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 RPP25LQ8N5L8 163 aaKnown RBP8.52□□□□□ -1.05
VPS53-207ENST00000570510 TNFAIP8L1Q8WVP5 186 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 FCGR1BQ92637 280 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 HIPK2Q9H2X6 1198 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 ACOT13Q9NPJ3 140 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 PARP11Q9NR21 331 aa8.52□□□□□ -1.05
VPS53-207ENST00000570510 IGHV4OR15-8A0A075B7B6 117 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 A0A087WW49 117 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 TRAV41A0A0B4J266 112 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 G3V318 75 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 GABRPO00591 440 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 HSPB6O14558 160 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 CNIH1O95406 144 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 BPNT1O95861 308 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 IGLV1-51P01701 117 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 UCHL1P09936 223 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 GZMHP20718 246 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 CD1BP29016 333 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 MED22Q15528 200 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 Q3ZCU0 254 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 ACSM3Q53FZ2 586 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 GLT8D1Q68CQ7 371 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 ZNF367Q7RTV3 350 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 ZNF554Q86TJ5 538 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 Q8N6K4 173 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 TOLLIPQ9H0E2 274 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 CST11Q9H112 138 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 ZNF580Q9UK33 172 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 LRRC42Q9Y546 428 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 RYR1P21817 5038 aa8.51□□□□□ -1.05
VPS53-207ENST00000570510 NUPR2A6NF83 97 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 SLC33A1O00400 549 aaPredicted RBP8.5□□□□□ -1.05
VPS53-207ENST00000570510 ARPC1BO15143 372 aaKnown RBP8.5□□□□□ -1.05
VPS53-207ENST00000570510 BRI3O95415 125 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 IL1AP01583 271 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 HSPB1P04792 205 aaKnown RBP8.5□□□□□ -1.05
VPS53-207ENST00000570510 LGALS1P09382 135 aaKnown RBP8.5□□□□□ -1.05
VPS53-207ENST00000570510 SRMP19623 302 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 CD40LGP29965 261 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 F2RL1P55085 397 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 RBM11P57052 281 aaKnown RBP8.5□□□□□ -1.05
VPS53-207ENST00000570510 KIAA0141Q14154 515 aaPredicted RBP8.5□□□□□ -1.05
VPS53-207ENST00000570510 MMDQ15546 238 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 C1orf100Q5SVJ3 147 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 COQ2Q96H96 371 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 OR14A2Q96R54 314 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 MGLLQ99685 303 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 PPIL3Q9H2H8 161 aaKnown RBP8.5□□□□□ -1.05
VPS53-207ENST00000570510 PLSCR3Q9NRY6 295 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 KIF25Q9UIL4 384 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms