RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 LINC00205P59089 165 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 BLCAPP62952 87 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 HMGN3Q15651 99 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 C6orf183Q5T699 404 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 MINOS1Q5TGZ0 78 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 FOXB2Q5VYV0 432 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 ZNF439Q8NDP4 499 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 OR56B1Q8NGI3 324 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 ZNF596Q8TC21 504 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 NUDCD2Q8WVJ2 157 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 TOMM40LQ969M1 308 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 RNF150Q9ULK6 438 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 TCF19Q9Y242 345 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 MINOS1-NBL1R4GNA1 71 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 A0A1W2PPI3 338 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 MEIS3P1A6NDR6 274 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 TMEM235A6NFC5 223 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 LEUTXA8MZ59 168 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 SPINT2O43291 252 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 GSTT2P0CG29 244 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 GSTT2BP0CG30 244 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 HIST1H1DP16402 221 aaKnown RBP11.08□□□□□ -0.64
CLN3-235ENST00000568497 ALDH3B2P48448 385 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 PRRX1P54821 245 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 CDNFQ49AH0 187 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 ZNF880Q6PDB4 577 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 MOB3BQ86TA1 216 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 LYG1Q8N1E2 194 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 RPEQ96AT9 228 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 MRPS26Q9BYN8 205 aaKnown RBP11.08□□□□□ -0.64
CLN3-235ENST00000568497 Q9N2K0 584 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 KCNIP1Q9NZI2 227 aa11.08□□□□□ -0.64
CLN3-235ENST00000568497 K7EIL1 84 aa11.07□□□□□ -0.64
CLN3-235ENST00000568497 GLAP06280 429 aa11.07□□□□□ -0.64
CLN3-235ENST00000568497 SNRNP70P08621 437 aaKnown RBP11.07□□□□□ -0.64
CLN3-235ENST00000568497 RAB6AP20340 208 aa11.07□□□□□ -0.64
CLN3-235ENST00000568497 HLA-DRB3P79483 266 aa11.07□□□□□ -0.64
CLN3-235ENST00000568497 MORN2Q502X0 79 aa11.07□□□□□ -0.64
CLN3-235ENST00000568497 IGSF11Q5DX21 431 aa11.07□□□□□ -0.64
CLN3-235ENST00000568497 TPRA1Q86W33 373 aa11.07□□□□□ -0.64
CLN3-235ENST00000568497 ABHD14BQ96IU4 210 aa11.07□□□□□ -0.64
CLN3-235ENST00000568497 RHBDL2Q9NX52 303 aa11.07□□□□□ -0.64
CLN3-235ENST00000568497 SLC23A1Q9UHI7 598 aa11.07□□□□□ -0.64
CLN3-235ENST00000568497 DNAH9Q9NYC9 4486 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 TRAV18A0A075B6X5 111 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 HSD17B6O14756 317 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 SSX5O60225 188 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 FCGR3AP08637 254 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 ARFRP1Q13795 201 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 CTF1Q16619 201 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 NSUN5P1Q3KNT7 163 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 RPL39P5Q59GN2 51 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 GLDNQ6ZMI3 551 aaPredicted RBP11.06□□□□□ -0.64
CLN3-235ENST00000568497 ODF3L1Q8IXM7 274 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 OR5R1Q8NH85 324 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 CFHR4Q92496 578 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 RITA1Q96K30 269 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 MRPL20Q9BYC9 149 aaKnown RBP11.06□□□□□ -0.64
CLN3-235ENST00000568497 ZNF702PQ9H963 129 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 C12orf4Q9NQ89 552 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 HSF4Q9ULV5 492 aa11.06□□□□□ -0.64
CLN3-235ENST00000568497 VGLL3A8MV65 326 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 BET1O15155 118 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 CA11O75493 328 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 IGKV1D-33P01593 117 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 IGKV1-33P01594 117 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 EIF4EP06730 217 aaKnown RBP11.05□□□□□ -0.64
CLN3-235ENST00000568497 HES1Q14469 280 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 SPCS2Q15005 226 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 CLVS1Q8IUQ0 354 aaPredicted RBP11.05□□□□□ -0.64
CLN3-235ENST00000568497 OCSTAMPQ9BR26 566 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 SLC25A33Q9BSK2 321 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 ABHD14AQ9BUJ0 271 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 ST6GALNAC5Q9BVH7 336 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 COMMD3Q9UBI1 195 aa11.05□□□□□ -0.64
CLN3-235ENST00000568497 IGHV1-3A0A0C4DH29 117 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 AMY1AP04745 511 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 AMY2AP04746 511 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 CEACAM6P40199 344 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 RANBP1P43487 201 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 TIMM50Q3ZCQ8 353 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 ZNF260Q3ZCT1 412 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 RNASE12Q5GAN4 147 aaKnown RBP11.04□□□□□ -0.64
CLN3-235ENST00000568497 C9orf152Q5JTZ5 239 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 SLC25A48Q6ZT89 311 aaKnown RBP11.04□□□□□ -0.64
CLN3-235ENST00000568497 GPR141Q7Z602 305 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 GVQW1Q8N7I0 195 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 SAMD12Q8N8I0 201 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 DRAXINQ8NBI3 349 aaPredicted RBP11.04□□□□□ -0.64
CLN3-235ENST00000568497 OR10A7Q8NGE5 316 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 OR52M1Q8NGK5 317 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 ST6GALNAC6Q969X2 333 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 GALMQ96C23 342 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 C11orf54Q9H0W9 315 aaPredicted RBP11.04□□□□□ -0.64
CLN3-235ENST00000568497 IFI27L2Q9H2X8 130 aa11.04□□□□□ -0.64
CLN3-235ENST00000568497 AMMECR1Q9Y4X0 333 aaPredicted RBP11.04□□□□□ -0.64
CLN3-235ENST00000568497 SAA2-SAA4A0A096LPE2 208 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 TRBV6-6A0A0A6YYG2 114 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 METTL21EPA6NDL7 271 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 TRDCB7Z8K6 153 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms