RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TENM2Q9NT68 2774 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 EPPK1P58107 5090 aaKnown RBP13.07□□□□□ -0.32
CLN3-211ENST00000564091 PNMA8CA0A1B0GUJ8 204 aa13.07□□□□□ -0.32
CLN3-211ENST00000564091 NBR2O15453 112 aa13.07□□□□□ -0.32
CLN3-211ENST00000564091 CA11O75493 328 aa13.07□□□□□ -0.32
CLN3-211ENST00000564091 FSTP19883 344 aa13.07□□□□□ -0.32
CLN3-211ENST00000564091 C5orf64Q2M2E5 130 aa13.07□□□□□ -0.32
CLN3-211ENST00000564091 LIN54Q6MZP7 749 aa13.07□□□□□ -0.32
CLN3-211ENST00000564091 OVCH2Q7RTZ1 564 aa13.07□□□□□ -0.32
CLN3-211ENST00000564091 MRPL30Q8TCC3 161 aaKnown RBP13.07□□□□□ -0.32
CLN3-211ENST00000564091 CASTOR1Q8WTX7 329 aa13.07□□□□□ -0.32
CLN3-211ENST00000564091 TMEM80Q96HE8 168 aa13.07□□□□□ -0.32
CLN3-211ENST00000564091 Q96M66 194 aa13.07□□□□□ -0.32
CLN3-211ENST00000564091 MBNL3Q9NUK0 354 aaKnown RBP13.07□□□□□ -0.32
CLN3-211ENST00000564091 JPT1Q9UK76 154 aa13.07□□□□□ -0.32
CLN3-211ENST00000564091 STARD9Q9P2P6 4700 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 IRGMA1A4Y4 181 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 FAM90A7PA6NKC0 464 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 FAM90A23PA8MXZ1 464 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 OVOL1O14753 267 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 SAP30O75446 220 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 BAG2O95816 211 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 SLURP1P55000 103 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 NDPQ00604 133 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 FAM27D1Q5T7N8 215 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 ZNF429Q86V71 674 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 LYPD6Q86Y78 171 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 MINDY2Q8NBR6 621 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 ZNF485Q8NCK3 441 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 DLX4Q92988 240 aaPredicted RBP13.06□□□□□ -0.32
CLN3-211ENST00000564091 FAM46BQ96A09 425 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 RCHY1Q96PM5 261 aa13.06□□□□□ -0.32
CLN3-211ENST00000564091 CHCHD3Q9NX63 227 aaKnown RBP13.06□□□□□ -0.32
CLN3-211ENST00000564091 SMPD3Q9NY59 655 aaPredicted RBP13.06□□□□□ -0.32
CLN3-211ENST00000564091 BIRC6Q9NR09 4857 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 SOX15O60248 233 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 PDCD6O75340 191 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 GLAP06280 429 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 SPNP16150 400 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 CAPGP40121 348 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 GABPB1Q06547 395 aaPredicted RBP13.05□□□□□ -0.32
CLN3-211ENST00000564091 ECSCRQ19T08 205 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 CASC10Q5T4H9 136 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 ZNF833PQ6ZTB9 187 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 C10orf67Q8IYJ2 551 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 NPBQ8NG41 125 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 MUC7Q8TAX7 377 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 FBXO7Q9Y3I1 522 aa13.05□□□□□ -0.32
CLN3-211ENST00000564091 SAA2-SAA4A0A096LPE2 208 aa13.04□□□□□ -0.32
CLN3-211ENST00000564091 YPEL1O60688 119 aa13.04□□□□□ -0.32
CLN3-211ENST00000564091 SAA2P0DJI9 122 aaPredicted RBP13.04□□□□□ -0.32
CLN3-211ENST00000564091 HTD2P86397 168 aa13.04□□□□□ -0.32
CLN3-211ENST00000564091 CDH26Q8IXH8 852 aa13.04□□□□□ -0.32
CLN3-211ENST00000564091 GGHQ92820 318 aa13.04□□□□□ -0.32
CLN3-211ENST00000564091 DERL3Q96Q80 235 aa13.04□□□□□ -0.32
CLN3-211ENST00000564091 YPEL2Q96QA6 119 aa13.04□□□□□ -0.32
CLN3-211ENST00000564091 FBXL15Q9H469 300 aa13.04□□□□□ -0.32
CLN3-211ENST00000564091 KIAA1456Q9P272 454 aa13.04□□□□□ -0.32
CLN3-211ENST00000564091 A3GALT2U3KPV4 340 aa13.04□□□□□ -0.32
CLN3-211ENST00000564091 DNAH1Q9P2D7 4330 aa13.04□□□□□ -0.32
CLN3-211ENST00000564091 A0A1W2PN81 502 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 LINC01619G3V211 115 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 FCN1O00602 326 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 ST8SIA5O15466 376 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 RGS11O94810 467 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 NDUFA3O95167 84 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 FRMD6-AS1P0C7T7 363 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 CHRNA7P36544 502 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 CX3CL1P78423 397 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 MED21Q13503 144 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 DOC2BQ14184 412 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 C6orf141Q5SZD1 244 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 OR10K2Q6IF99 312 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 FAM131AQ6UXB0 335 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 ZNF554Q86TJ5 538 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 OR2AK2Q8NG84 335 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 ARPC1AQ92747 370 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 GALMQ96C23 342 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 SULT4A1Q9BR01 284 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 TOLLIPQ9H0E2 274 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 IFI27L2Q9H2X8 130 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 TPSG1Q9NRR2 321 aa13.03□□□□□ -0.32
CLN3-211ENST00000564091 IGHV4OR15-8A0A075B7B6 117 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 A0A087WW49 117 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 TRIM64CA6NLI5 447 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 IGHV3-11P01762 117 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 EGR2P11161 476 aaPredicted RBP13.02□□□□□ -0.33
CLN3-211ENST00000564091 GP9P14770 177 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 ST3GAL4Q11206 333 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 LRRC36Q1X8D7 754 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 RPL39P5Q59GN2 51 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 C19orf54Q5BKX5 351 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 GLDNQ6ZMI3 551 aaPredicted RBP13.02□□□□□ -0.33
CLN3-211ENST00000564091 CYGBQ8WWM9 190 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 IL1F10Q8WWZ1 152 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 FAAP24Q9BTP7 215 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 GAR1Q9NY12 217 aaKnown RBP13.02□□□□□ -0.33
CLN3-211ENST00000564091 FOXA2Q9Y261 457 aaPredicted RBP13.02□□□□□ -0.33
CLN3-211ENST00000564091 ERGIC3Q9Y282 383 aa13.02□□□□□ -0.33
CLN3-211ENST00000564091 LGALS1P09382 135 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms