RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CD300LBA8K4G0 201 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 PATE3B3GLJ2 98 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 WDR1O75083 606 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 CYB5R3P00387 301 aaPredicted RBP11.22□□□□□ -0.61
CLN3-210ENST00000563874 CYC1P08574 325 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 DPPA3Q6W0C5 159 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 VASH2Q86V25 355 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 SDF2L1Q9HCN8 221 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 NBEAQ8NFP9 2946 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 TRAV1-1A0A0B4J248 108 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 IGKV1-5P01602 117 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 TUBG1P23258 451 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 CLN3Q13286 438 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 ADIRFQ15847 76 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 OR8G2PQ6IF36 304 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 IL22RA2Q969J5 263 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 PACRGQ96M98 296 aaPredicted RBP11.22□□□□□ -0.61
CLN3-210ENST00000563874 B4DEV8 164 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 PTBP3O95758 552 aaKnown RBP11.22□□□□□ -0.61
CLN3-210ENST00000563874 MDH2P40926 338 aaKnown RBP11.22□□□□□ -0.61
CLN3-210ENST00000563874 SPATA46Q5T0L3 261 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 C14orf144Q96I85 54 aa11.22□□□□□ -0.61
CLN3-210ENST00000563874 UBE2L5PA0A1B0GUS4 154 aa11.21□□□□□ -0.61
CLN3-210ENST00000563874 MAP1LC3B2A6NCE7 125 aa11.21□□□□□ -0.61
CLN3-210ENST00000563874 RPS16P62249 146 aaKnown RBP11.21□□□□□ -0.61
CLN3-210ENST00000563874 SRSF7Q16629 238 aaKnown RBP eCLIP11.21□□□□□ -0.61
CLN3-210ENST00000563874 PPP1R32Q7Z5V6 425 aa11.21□□□□□ -0.61
CLN3-210ENST00000563874 OR10V1Q8NGI7 309 aa11.21□□□□□ -0.61
CLN3-210ENST00000563874 OR13D1Q8NGV5 346 aa11.21□□□□□ -0.61
CLN3-210ENST00000563874 MEGF10Q96KG7 1140 aa11.21□□□□□ -0.61
CLN3-210ENST00000563874 OR4C12Q96R67 309 aa11.21□□□□□ -0.61
CLN3-210ENST00000563874 MAP1LC3BQ9GZQ8 125 aa11.21□□□□□ -0.61
CLN3-210ENST00000563874 SMOC1Q9H4F8 434 aa11.21□□□□□ -0.61
CLN3-210ENST00000563874 DLL3Q9NYJ7 618 aa11.21□□□□□ -0.61
CLN3-210ENST00000563874 IGLV2-14P01704 120 aa11.21□□□□□ -0.62
CLN3-210ENST00000563874 SPCS3P61009 180 aa11.21□□□□□ -0.62
CLN3-210ENST00000563874 CACNA1DQ01668 2161 aa11.21□□□□□ -0.62
CLN3-210ENST00000563874 TESK1Q15569 626 aa11.21□□□□□ -0.62
CLN3-210ENST00000563874 TCEAL6Q6IPX3 200 aa11.21□□□□□ -0.62
CLN3-210ENST00000563874 SSX9Q7RTT3 188 aa11.21□□□□□ -0.62
CLN3-210ENST00000563874 APOBEC3DQ96AK3 386 aaPredicted RBP11.21□□□□□ -0.62
CLN3-210ENST00000563874 RPUSD4Q96CM3 377 aaKnown RBP11.21□□□□□ -0.62
CLN3-210ENST00000563874 HIST1H2BLQ99880 126 aa11.21□□□□□ -0.62
CLN3-210ENST00000563874 GAB2Q9UQC2 676 aa11.21□□□□□ -0.62
CLN3-210ENST00000563874 COL6A3P12111 3177 aa11.21□□□□□ -0.62
CLN3-210ENST00000563874 ELOA3CA0A087WX78 387 aaPredicted RBP11.2□□□□□ -0.62
CLN3-210ENST00000563874 SIRPB1O00241 398 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 CA6P23280 308 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 GFRA1P56159 465 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 PNRC1Q12796 327 aaPredicted RBP11.2□□□□□ -0.62
CLN3-210ENST00000563874 SAXO1Q8IYX7 474 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 FAM58AQ8N1B3 248 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 OR10G4Q8NGN3 311 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 SMIM7Q9BQ49 75 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 HES7Q9BYE0 225 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 NCOR1P1Q9H4R4 102 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 SMPD2O60906 423 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 IGKV1D-33P01593 117 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 IGKV1-33P01594 117 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 CYB561P49447 251 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 RND2P52198 227 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 RNPS1Q15287 305 aaKnown RBP11.2□□□□□ -0.62
CLN3-210ENST00000563874 LHX4Q969G2 390 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 HIPK2Q9H2X6 1198 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 MED12LQ86YW9 2145 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 DOCK11Q5JSL3 2073 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 ZNF737O75373 536 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 RTP5Q14D33 572 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 OR5A2Q8NGI9 324 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 MBD3L1Q8WWY6 194 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 OR5P3Q8WZ94 311 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 LURAP1Q96LR2 239 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 VAX2Q9UIW0 290 aa11.2□□□□□ -0.62
CLN3-210ENST00000563874 FAM166BA8MTA8 275 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 PHOX2AO14813 284 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 DEGS1O15121 323 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 ERVS71-1P61550 626 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 C3AR1Q16581 482 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 LRRC75BQ2VPJ9 315 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 ZNF585BQ52M93 769 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 RPP25LQ8N5L8 163 aaKnown RBP11.19□□□□□ -0.62
CLN3-210ENST00000563874 OR4X1Q8NH49 305 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 SLC25A22Q9H936 323 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 DOCK10Q96BY6 2186 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 MBP02144 154 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 DEFA4P12838 97 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 NDUFB7P17568 137 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 IL2RGP31785 369 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 HBG1P69891 147 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 HBG2P69892 147 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 TDHQ8IZJ6 230 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 GATAD1Q8WUU5 269 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 WDR61Q9GZS3 305 aaKnown RBP11.19□□□□□ -0.62
CLN3-210ENST00000563874 SLC39A9Q9NUM3 307 aa11.19□□□□□ -0.62
CLN3-210ENST00000563874 USF3Q68DE3 2245 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 SMCO3A2RU48 225 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 CLDN1O95832 211 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 CD81P60033 236 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 FAM53AQ6NSI3 398 aaPredicted RBP11.18□□□□□ -0.62
CLN3-210ENST00000563874 C16orf82Q7Z2V1 217 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms