RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 OR2AK2Q8NG84 335 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 OR10R2Q8NGX6 335 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 CENPOQ9BU64 300 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 WNT10AQ9GZT5 417 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 OR51E2Q9H255 320 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 MMP27Q9H306 513 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 GHITMQ9H3K2 345 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 PKD1L1Q8TDX9 2849 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 SLC31A2O15432 143 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 FBXO24O75426 580 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 SCGNO76038 276 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 ZBTB25P24278 435 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 HLA-DRB3P79483 266 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 GNMTQ14749 295 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 PLAC9Q5JTB6 97 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 FAM53AQ6NSI3 398 aaPredicted RBP10.68□□□□□ -0.7
CLK3-213ENST00000563842 OR8H1Q8NGG4 311 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 EDARADDQ8WWZ3 215 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 CHCHD6Q9BRQ6 235 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 Q9N2K0 584 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 PIPOXQ9P0Z9 390 aa10.68□□□□□ -0.7
CLK3-213ENST00000563842 TRRAPQ9Y4A5 3859 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 LOC100506127A0A0U1RQW1 187 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 SERPINE3A8MV23 424 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 ITGB1BP1O14713 200 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 HSPA12AO43301 675 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 TMEM127O75204 238 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 MOSP00540 346 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 CSF1P09603 554 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 SDC2P34741 201 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 SCAND1P57086 179 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 HNF4GQ14541 408 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 C9orf152Q5JTZ5 239 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 FAM71F2Q6NXP2 309 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 CENPVQ7Z7K6 275 aaPredicted RBP10.67□□□□□ -0.7
CLK3-213ENST00000563842 EAF1Q96JC9 268 aaPredicted RBP10.67□□□□□ -0.7
CLK3-213ENST00000563842 S1PR3Q99500 378 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 HDHD3Q9BSH5 251 aaPredicted RBP10.67□□□□□ -0.7
CLK3-213ENST00000563842 ATG5Q9H1Y0 275 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 SLC23A1Q9UHI7 598 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 DAPK2Q9UIK4 370 aa10.67□□□□□ -0.7
CLK3-213ENST00000563842 IGHV3-72A0A0B4J1Y9 119 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 TRDCB7Z8K6 153 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 RAB27BO00194 218 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 RAB29O14966 203 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 AMY1AP04745 511 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 AMY2AP04746 511 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 SLC2A2P11168 524 aaPredicted RBP10.66□□□□□ -0.7
CLK3-213ENST00000563842 HIST1H1DP16402 221 aaKnown RBP10.66□□□□□ -0.7
CLK3-213ENST00000563842 TALDO1P37837 337 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 SERPINB10P48595 397 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 KIR2DS1Q14954 304 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 SFXN4Q6P4A7 337 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 Q6ZS46 218 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 NR2C2APQ86WQ0 139 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 C5orf56Q8N8D9 126 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 CYYR1Q96J86 154 aa10.66□□□□□ -0.7
CLK3-213ENST00000563842 A0A0B4J203 849 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 SMIM30A4D0T7 59 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 NCBP2LA6PVI3 153 aaKnown RBP10.65□□□□□ -0.7
CLK3-213ENST00000563842 MFNGO00587 321 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 DIRAS3O95661 229 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 GNB3P16520 340 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 CEACAM6P40199 344 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 PLA2G7Q13093 441 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 LSAMPQ13449 338 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 ARFRP1Q13795 201 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 SRSF7Q16629 238 aaKnown RBP eCLIP10.65□□□□□ -0.7
CLK3-213ENST00000563842 MOGAT2Q3SYC2 334 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 C5orf24Q7Z6I8 188 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 NDUFA11Q86Y39 141 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 CROCCP3Q8IVE0 287 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 Q8N6K4 173 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 C11orf44Q8N8P7 122 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 OR5AU1Q8NGC0 362 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 OR4A4PQ8NGN8 299 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 PHF21AQ96BD5 680 aa10.65□□□□□ -0.7
CLK3-213ENST00000563842 NOTCH1P46531 2555 aa10.65□□□□□ -0.71
CLK3-213ENST00000563842 A0A075B6Q4 140 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 AIREO43918 545 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 OPN1MWP04001 364 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 FCGR3AP08637 254 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 SCTP09683 121 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 OPN1MW2P0DN77 364 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 OPN1MW3P0DN78 364 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 PITPNAQ00169 270 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 MXD1Q05195 221 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 TMEM95Q3KNT9 176 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 FBLN7Q53RD9 439 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 Q6ZPA2 131 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 ZNF833PQ6ZTB9 187 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 FOXRED2Q8IWF2 684 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 ODF3L1Q8IXM7 274 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 OR4X2Q8NGF9 303 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 WIPF2Q8TF74 440 aaPredicted RBP10.64□□□□□ -0.71
CLK3-213ENST00000563842 CHPT1Q8WUD6 406 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 RASL11BQ9BPW5 248 aa10.64□□□□□ -0.71
CLK3-213ENST00000563842 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.64□□□□□ -0.71
CLK3-213ENST00000563842 LIN7CQ9NUP9 197 aaKnown RBP10.64□□□□□ -0.71
CLK3-213ENST00000563842 KCNK7Q9Y2U2 307 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms