RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 NOL4LQ96MY1 436 aaPredicted RBP12.41□□□□□ -0.42
VPS39-203ENST00000561797 YPEL2Q96QA6 119 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 ABHD14AQ9BUJ0 271 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 STEAP1Q9UHE8 339 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 TMEM272A0A1B0GTI8 110 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 SHISA3A0PJX4 238 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 PSMB11A5LHX3 300 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 SERPINE3A8MV23 424 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 G3V4G9 280 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 LANCL1O43813 399 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 MRPS14O60783 128 aaKnown RBP12.4□□□□□ -0.42
VPS39-203ENST00000561797 TMEM50BP56557 158 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 OR10A3P58181 314 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 PLA2G7Q13093 441 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 PDLIM3Q53GG5 364 aaPredicted RBP12.4□□□□□ -0.42
VPS39-203ENST00000561797 ZNF880Q6PDB4 577 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 SLC35E3Q7Z769 313 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 SPARTQ8N0X7 666 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 ARHGAP5-AS1Q96IT6 56 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 PECRQ9BY49 303 aa12.4□□□□□ -0.42
VPS39-203ENST00000561797 TRAV1-2A0A0B4J238 106 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 TRDV1A0A1B0GX56 115 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 LINC01548A6NM66 108 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 FOXI3A8MTJ6 420 aaPredicted RBP12.39□□□□□ -0.43
VPS39-203ENST00000561797 PSMB9P28065 219 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 OR3A3P47888 321 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 UBE2UQ5VVX9 321 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 C22orf42Q6IC83 251 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 CD200R1LQ6Q8B3 271 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 MOB1BQ7L9L4 216 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 ODF3L1Q8IXM7 274 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 Q8N9W7 124 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 OR56B1Q8NGI3 324 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 RIMS4Q9H426 269 aaPredicted RBP12.39□□□□□ -0.43
VPS39-203ENST00000561797 RAB22AQ9UL26 194 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 HSF4Q9ULV5 492 aa12.39□□□□□ -0.43
VPS39-203ENST00000561797 TSSC4Q9Y5U2 329 aaPredicted RBP12.39□□□□□ -0.43
VPS39-203ENST00000561797 SMIM30A4D0T7 59 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 LDLRAD4O15165 306 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 ST8SIA5O15466 376 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 IGHG2P01859 326 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 PF4V1P10720 104 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 RAB3BP20337 219 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 RANBP1P43487 201 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 F2RL1P55085 397 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 LSAMPQ13449 338 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 LY6G6FQ5SQ64 297 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 FOXRED2Q8IWF2 684 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 OR2AK2Q8NG84 335 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 CHPT1Q8WUD6 406 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 S1PR3Q99500 378 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 RASL11BQ9BPW5 248 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 CMSS1Q9BQ75 279 aaKnown RBP12.38□□□□□ -0.43
VPS39-203ENST00000561797 MRPL20Q9BYC9 149 aaKnown RBP12.38□□□□□ -0.43
VPS39-203ENST00000561797 YTHDF1Q9BYJ9 559 aaKnown RBP12.38□□□□□ -0.43
VPS39-203ENST00000561797 PLSCR3Q9NRY6 295 aa12.38□□□□□ -0.43
VPS39-203ENST00000561797 LIN7CQ9NUP9 197 aaKnown RBP12.38□□□□□ -0.43
VPS39-203ENST00000561797 NOTCH1P46531 2555 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 CMYA5Q8N3K9 4069 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 SAA2-SAA4A0A096LPE2 208 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 TRBV6-6A0A0A6YYG2 114 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 A0A0B4J203 849 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 IFITM5A6NNB3 132 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 SAA2P0DJI9 122 aaPredicted RBP12.37□□□□□ -0.43
VPS39-203ENST00000561797 GPR12P47775 334 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 HLA-DRB3P79483 266 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 PLAC9Q5JTB6 97 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 NABP2Q9BQ15 211 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 PARP12Q9H0J9 701 aaKnown RBP12.37□□□□□ -0.43
VPS39-203ENST00000561797 ABCG5Q9H222 651 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 Q9N2K0 584 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 SLC23A1Q9UHI7 598 aa12.37□□□□□ -0.43
VPS39-203ENST00000561797 HSPA12AO43301 675 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 PF4P02776 101 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 SCTP09683 121 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 CD33P20138 364 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 CEACAM6P40199 344 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 MOGAT2Q3SYC2 334 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 OXLD1Q5BKU9 147 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 SAMD5Q5TGI4 173 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 ZNF833PQ6ZTB9 187 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 STPG2Q8N412 459 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 FCGR1BQ92637 280 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 IFI27L2Q9H2X8 130 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 C12orf4Q9NQ89 552 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 OR1A1Q9P1Q5 309 aa12.36□□□□□ -0.43
VPS39-203ENST00000561797 A0A075B6Q4 140 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 CD3GP09693 182 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 SLC2A2P11168 524 aaPredicted RBP12.35□□□□□ -0.43
VPS39-203ENST00000561797 GALP22466 123 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 ZBTB25P24278 435 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 SLC35B1P78383 322 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 MRPS15P82914 257 aaKnown RBP12.35□□□□□ -0.43
VPS39-203ENST00000561797 MMDQ15546 238 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 BEAN1Q3B7T3 259 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 RPL39P5Q59GN2 51 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 NR2C2APQ86WQ0 139 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 OR8H1Q8NGG4 311 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 RAB3CQ96E17 227 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 ABHD14BQ96IU4 210 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms