RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 GSN-AS1Q9NRJ2 163 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 PSENENQ9NZ42 101 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 A0A1B0GU03 582 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 OR5B21A6NL26 309 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 OR8G2PQ6IF36 304 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 ZNF808Q8N4W9 903 aaPredicted RBP10.88□□□□□ -0.67
LDLR-207ENST00000558013 DRAM1Q8N682 238 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 PLK3Q9H4B4 646 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 METTL1Q9UBP6 276 aaKnown RBP10.88□□□□□ -0.67
LDLR-207ENST00000558013 TINAGQ9UJW2 476 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 ADGRG4Q8IZF6 3080 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 IFITM10A6NMD0 228 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 J3QT63 122 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 NXPH2O95156 264 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 DEFA4P12838 97 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 ZNF506Q5JVG8 444 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 ZNF497Q6ZNH5 498 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 KDF1Q8NAX2 398 aaPredicted RBP10.87□□□□□ -0.67
LDLR-207ENST00000558013 OR1L1Q8NH94 360 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 POM121Q96HA1 1249 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 ZPBPQ9BS86 351 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 CABLES2Q9BTV7 478 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 RIMS4Q9H426 269 aaPredicted RBP10.87□□□□□ -0.67
LDLR-207ENST00000558013 SEBOXQ9HB31 216 aaPredicted RBP10.87□□□□□ -0.67
LDLR-207ENST00000558013 KALRNO60229 2985 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 DUXBA0A1W2PPF3 345 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.87□□□□□ -0.67
LDLR-207ENST00000558013 AGFG2O95081 481 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 TNFSF15O95150 251 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 KRASP01116 189 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 IFNA5P01569 189 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 CD59P13987 128 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 MDKP21741 143 aaPredicted RBP10.87□□□□□ -0.67
LDLR-207ENST00000558013 TLE4Q04727 773 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 SRSF6Q13247 344 aaKnown RBP10.87□□□□□ -0.67
LDLR-207ENST00000558013 KIAA0141Q14154 515 aaPredicted RBP10.87□□□□□ -0.67
LDLR-207ENST00000558013 RNPS1Q15287 305 aaKnown RBP10.87□□□□□ -0.67
LDLR-207ENST00000558013 SPINK9Q5DT21 86 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 CDPF1Q6NVV7 123 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 ZNF525Q8N782 197 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 RBMXL1Q96E39 390 aaKnown RBP10.87□□□□□ -0.67
LDLR-207ENST00000558013 PLPPR2Q96GM1 343 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 C5orf30Q96GV9 206 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 SSX3Q99909 188 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 AP4M1O00189 453 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 CEACAM1P13688 526 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 MPV17P39210 176 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 PDZD11Q5EBL8 140 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 GFI1BQ5VTD9 330 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 FGFRL1Q8N441 504 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 DEFB123Q8N688 67 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 MDS2Q8NDY4 140 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 SLC25A40Q8TBP6 338 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 GTF3AQ92664 365 aaKnown RBP10.87□□□□□ -0.67
LDLR-207ENST00000558013 IL22RA2Q969J5 263 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 ABHD14BQ96IU4 210 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 OR4C12Q96R67 309 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 ABI3Q9P2A4 366 aa10.87□□□□□ -0.67
LDLR-207ENST00000558013 ATMQ13315 3056 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 TRBV23-1A0A0A0MS06 115 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 TRBV6-6A0A0A6YYG2 114 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 PPIHO43447 177 aaKnown RBP10.86□□□□□ -0.67
LDLR-207ENST00000558013 SMPD2O60906 423 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 FABP1P07148 127 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 NDUFA6P56556 154 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 PPP1CBP62140 327 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 RPL30P62888 115 aaKnown RBP10.86□□□□□ -0.67
LDLR-207ENST00000558013 AESQ08117 197 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 ZNF816Q0VGE8 651 aaPredicted RBP10.86□□□□□ -0.67
LDLR-207ENST00000558013 PSG7Q13046 419 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 ZNF674Q2M3X9 581 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 TMEM164Q5U3C3 297 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 BTNL3Q6UXE8 466 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 Q6ZR03 302 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 OR52L2PQ8NGH6 319 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 NIPSNAP3BQ9BS92 247 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 GPR87Q9BY21 358 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 GVINP1Q7Z2Y8 2422 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 CDX4O14627 284 aaPredicted RBP10.86□□□□□ -0.67
LDLR-207ENST00000558013 IGKV1D-33P01593 117 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 IGKV1-33P01594 117 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 HSPB1P04792 205 aaKnown RBP10.86□□□□□ -0.67
LDLR-207ENST00000558013 S100A9P06702 114 aaKnown RBP10.86□□□□□ -0.67
LDLR-207ENST00000558013 S100GP29377 79 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 G6PCP35575 357 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 ERVK11-1P61568 191 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 FAM90A2PQ658T7 463 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 SPNS3Q6ZMD2 512 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 RCC1LQ96I51 464 aaKnown RBP10.86□□□□□ -0.67
LDLR-207ENST00000558013 RAB40CQ96S21 281 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 MIOXQ9UGB7 285 aa10.86□□□□□ -0.67
LDLR-207ENST00000558013 UBE2L5PA0A1B0GUS4 154 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 LOC102723971A0A1B0GUV8 181 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 CYB5BO43169 146 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 MMP9P14780 707 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 OR3A1P47881 315 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 ZNF787Q6DD87 383 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 LILRB2Q8N423 598 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 PKIBQ9C010 78 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 TMPRSS5Q9H3S3 457 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms