RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TMPRSS2O15393 492 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 CLEC3AO75596 197 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 CLDN1O95832 211 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 SELPP16109 830 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 HNRNPA2B1P22626 353 aaKnown RBP11.8□□□□□ -0.52
SHMT2-226ENST00000556825 GATA3P23771 443 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 IL12BP29460 328 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 CCL7P80098 99 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 SERF2P84101 59 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 BRICD5Q6PL45 260 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 ST6GALNAC6Q969X2 333 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 APOOQ9BUR5 198 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 ULBP2Q9BZM5 246 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 C12orf49Q9H741 205 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 FAM60AQ9NP50 221 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 ANKRD30BLA7E2S9 258 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 KIAA1324LA8MWY0 1029 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF878C9JN71 531 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 H7C1C5 153 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 K7EQS6 105 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 RENP00797 406 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 HLA-DRB1P01911 266 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 CTXN1P60606 82 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 SEC11AP67812 179 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 HIST1H1AQ02539 215 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-226ENST00000556825 TBR1Q16650 682 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF324BQ6AW86 544 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-226ENST00000556825 KCTD18Q6PI47 426 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-226ENST00000556825 GLIPR1L1Q6UWM5 242 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 LRRC75AQ8NAA5 344 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF721Q8TF20 911 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 DAZLQ92904 295 aaKnown RBP11.8□□□□□ -0.52
SHMT2-226ENST00000556825 SCAMP4Q969E2 229 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 RCHY1Q96PM5 261 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 JMJD8Q96S16 334 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 DUSP23Q9BVJ7 150 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 METTL7AQ9H8H3 244 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 SLC39A9Q9NUM3 307 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 BOKQ9UMX3 212 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-226ENST00000556825 HTTP42858 3142 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 LINC01553A4QN01 128 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 H3BRM9 83 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 SIVA1O15304 175 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 SRSF10O75494 262 aaKnown RBP11.79□□□□□ -0.52
SHMT2-226ENST00000556825 POU2F2P09086 479 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 ADH5P11766 374 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 CA7P43166 264 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 VEGFBP49765 207 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF90Q03938 601 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 PLCXD2Q0VAA5 305 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 FOXI2Q6ZQN5 318 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 Q6ZSR6 202 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 MARCH3Q86UD3 253 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 SUMF1Q8NBK3 374 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 SCCPDHQ8NBX0 429 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 TET1Q8NFU7 2136 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 TSKUQ8WUA8 353 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF296Q8WUU4 475 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-226ENST00000556825 SFXN3Q9BWM7 321 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 TMEM59Q9BXS4 323 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 AICDAQ9GZX7 198 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 TP73-AS1Q9UF72 201 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 B3GALT1Q9Y5Z6 326 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 R4GMQ9 66 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 NPIPA5E9PKD4 350 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 NPIPA3F8WFD2 350 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 TMEM50AO95807 157 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 ARL3P36405 182 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 PPOXP50336 477 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF141Q15928 474 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 Q56UQ5 140 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 EMC4Q5J8M3 183 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 TSPO2Q5TGU0 170 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 SPATA31B1PQ5VZV4 182 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 BOD1L2Q8IYS8 172 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 OR5D14Q8NGL3 314 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 SPSB4Q96A44 273 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 PERPQ96FX8 193 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 SCN2AQ99250 2005 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 NPIPA1Q9UND3 350 aa11.79□□□□□ -0.52
SHMT2-226ENST00000556825 J3QR89 54 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 NPY1RP25929 384 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 MEF2CQ06413 473 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-226ENST00000556825 AESQ08117 197 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 GABRA6Q16445 453 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 ACKR1Q16570 336 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 CDCP2Q5VXM1 449 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 FAM19A2Q8N3H0 131 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 OR8B3Q8NGG8 313 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 TMEM45BQ96B21 275 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 OR8B2Q96RD0 313 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 SPIN2AQ99865 258 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 SPIN2BQ9BPZ2 258 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 GNB1LQ9BYB4 327 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 TAC3Q9UHF0 121 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 MDFIC2A0A1B0GVS7 189 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 SNURFLB1AK76 121 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-226ENST00000556825 CNIH1O95406 144 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms