RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 FAM90A7PA6NKC0 464 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 LINC01548A6NM66 108 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 FAM90A23PA8MXZ1 464 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 H3BNX3 289 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 MAGEB3O15480 346 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 TXNL1O43396 289 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 ZNF780AO75290 641 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-220ENST00000556486 IGHG4P01861 327 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 IGF1P05019 195 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 CD2P06729 351 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 ELANEP08246 267 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 FRMD6-AS1P0C7T7 363 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 CD1BP29016 333 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 GBX2P52951 348 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-220ENST00000556486 RBM11P57052 281 aaKnown RBP7.8□□□□□ -1.16
SCFD1-220ENST00000556486 RSU1Q15404 277 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 ZSCAN26Q16670 478 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 PNLIPRP3Q17RR3 467 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 MPV17LQ2QL34 196 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 ZNF260Q3ZCT1 412 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 C9orf66Q5T8R8 295 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 GAPTQ8N292 157 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 FAM71E2Q8N5Q1 922 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 Q8N9W7 124 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 SUMF2Q8NBJ7 301 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 OR2T10Q8NGZ9 312 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 OR8U1Q8NH10 309 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 RFESDQ8TAC1 157 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 MYOZ3Q8TDC0 251 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 GPR148Q8TDV2 347 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 RTN4IP1Q8WWV3 396 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-220ENST00000556486 NR1H4Q96RI1 486 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-220ENST00000556486 DCLRE1BQ9H816 532 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 TMEM138Q9NPI0 162 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 FAM118AQ9NWS6 357 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 PAK1IP1Q9NWT1 392 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-220ENST00000556486 ST3GAL6Q9Y274 331 aa7.8□□□□□ -1.16
SCFD1-220ENST00000556486 SIRT4Q9Y6E7 314 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-220ENST00000556486 HERC2O95714 4834 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 GAGE10A6NGK3 116 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 MOSP00540 346 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 IGHV3-7P01780 117 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 LIMS3P0CW19 117 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 LIMS4P0CW20 117 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 VHLP40337 213 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 GNG10P50151 68 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 GPR50Q13585 617 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 HNF4GQ14541 408 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 CXorf66Q5JRM2 361 aaPredicted RBP7.79□□□□□ -1.16
SCFD1-220ENST00000556486 ZFP1Q6P2D0 407 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 ZNF497Q6ZNH5 498 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 SLC25A48Q6ZT89 311 aaKnown RBP7.79□□□□□ -1.16
SCFD1-220ENST00000556486 ZNF439Q8NDP4 499 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 OR5M8Q8NGP6 311 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 OR52N1Q8NH53 320 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 TSEN15Q8WW01 171 aaKnown RBP7.79□□□□□ -1.16
SCFD1-220ENST00000556486 PYDC1Q8WXC3 89 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 TMEM106AQ96A25 262 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 GPER1Q99527 375 aa7.79□□□□□ -1.16
SCFD1-220ENST00000556486 RCC2Q9P258 522 aaKnown RBP7.79□□□□□ -1.16
SCFD1-220ENST00000556486 FRAS1Q86XX4 4008 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 DIRC3C9JPN6 131 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 DYNC1I1O14576 645 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 GEMIN2O14893 280 aaKnown RBP7.78□□□□□ -1.16
SCFD1-220ENST00000556486 GPX5O75715 221 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 CIB2O75838 187 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 OR7C1O76099 320 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-220ENST00000556486 MT-ND4P03905 459 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 IL3RAP26951 378 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 PSMB8P28062 276 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 ZNF93P35789 620 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-220ENST00000556486 LPCAT4Q643R3 524 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 RPL22L1Q6P5R6 122 aaKnown RBP7.78□□□□□ -1.16
SCFD1-220ENST00000556486 MOB3BQ86TA1 216 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 CBR4Q8N4T8 237 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 OR52I1Q8NGK6 324 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 OR10K1Q8NGX5 313 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 C4orf3Q8WVX3 66 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 ARL11Q969Q4 196 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 MRPS24Q96EL2 167 aaKnown RBP7.78□□□□□ -1.16
SCFD1-220ENST00000556486 S1PR3Q99500 378 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 METTL9Q9H1A3 318 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 SPACA1Q9HBV2 294 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 RAB9BQ9NP90 201 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 FGF20Q9NP95 211 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-220ENST00000556486 TAS2R4Q9NYW5 299 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 ZNF581Q9P0T4 197 aa7.78□□□□□ -1.16
SCFD1-220ENST00000556486 RPL36Q9Y3U8 105 aaKnown RBP7.78□□□□□ -1.16
SCFD1-220ENST00000556486 TRAV39A0A0B4J263 110 aa7.77□□□□□ -1.17
SCFD1-220ENST00000556486 A0A1W2PPE3 182 aa7.77□□□□□ -1.17
SCFD1-220ENST00000556486 RBMY1BA6NDE4 496 aaKnown RBP7.77□□□□□ -1.17
SCFD1-220ENST00000556486 RBMY1EA6NEQ0 496 aaKnown RBP7.77□□□□□ -1.17
SCFD1-220ENST00000556486 NCBP2LA6PVI3 153 aaKnown RBP7.77□□□□□ -1.17
SCFD1-220ENST00000556486 SDCBPO00560 298 aaPredicted RBP7.77□□□□□ -1.17
SCFD1-220ENST00000556486 CA11O75493 328 aa7.77□□□□□ -1.17
SCFD1-220ENST00000556486 SC5DO75845 299 aa7.77□□□□□ -1.17
SCFD1-220ENST00000556486 CDRT1O95170 752 aa7.77□□□□□ -1.17
SCFD1-220ENST00000556486 RBMY1DP0C7P1 496 aaKnown RBP7.77□□□□□ -1.17
SCFD1-220ENST00000556486 OR5H8P0DN80 308 aa7.77□□□□□ -1.17
SCFD1-220ENST00000556486 MED14OSP0DP75 135 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms