RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 ZNF43P17038 809 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 NTF4P34130 210 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 NPBWR2P48146 333 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 DSCR4P56555 118 aaPredicted RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 CLRN1P58418 232 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 TLE1Q04724 770 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 TGIF1Q15583 401 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 POU2AF1Q16633 256 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SOHLH1Q5JUK2 328 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 FFAR4Q5NUL3 377 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 LRRC75A-AS1Q8N1F1 130 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 OR1P1Q8NH06 330 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 PSMF1Q92530 271 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 AP1S3Q96PC3 154 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SEC11CQ9BY50 192 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 PBOV1Q9GZY1 135 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 VPREB3Q9UKI3 123 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 ST3GAL6Q9Y274 331 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 LOXL2Q9Y4K0 774 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 ZNF292O60281 2723 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 TPRP12270 2363 aaKnown RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 ZNF318Q5VUA4 2279 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 GAGE12BA1L429 117 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SMIM9A6NGZ8 99 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 CDX4O14627 284 aaPredicted RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 HPRT1P00492 218 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SULT1A3P0DMM9 295 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SULT1A4P0DMN0 295 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 GZMBP10144 247 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 PSMB1P20618 241 aaKnown RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 CCKARP32238 428 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 DNASE1L1P49184 302 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 ZNF133P52736 654 aaPredicted RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 EMP1P54849 157 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 F2RL1P55085 397 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 PSMA6P60900 246 aaKnown RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 RPL24P83731 157 aaKnown RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 TCTEX1D4Q5JR98 221 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 PLA2G2CQ5R387 149 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 C1orf100Q5SVJ3 147 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 TMEM211Q6ICI0 200 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 Q6ZTK2 550 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 C5orf24Q7Z6I8 188 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 PAQR4Q8N4S7 273 aaPredicted RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 TCTEX1D1Q8N7M0 179 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 ZIC4Q8N9L1 334 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 OR1J2Q8NGS2 313 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 CT55Q8WUE5 264 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 NABP1Q96AH0 204 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 JMJD8Q96S16 334 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 ANAPC13Q9BS18 74 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SRXN1Q9BYN0 137 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SRD5A3Q9H8P0 318 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 MOB1AQ9H8S9 216 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 DEPPQ9NTK1 212 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 TRAPPC2LQ9UL33 140 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 CSDC2Q9Y534 153 aaKnown RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 MMP24Q9Y5R2 645 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 COX11Q9Y6N1 276 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 FAM186AA6NE01 2351 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 A0A0J9YW62 118 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 LRRC3CA6NJW4 275 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SLC22A20A6NK97 555 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 ZNF878C9JN71 531 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 HSBP1O75506 76 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 TSPAN13O95857 204 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 ADH4P08319 380 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 RFPL3SP0C7P2 107 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 PAX1P15863 534 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 FKBP2P26885 142 aaKnown RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 CNN1P51911 297 aaKnown RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 ATP1B3P54709 279 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 CLDN17P56750 224 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SLC35A1P78382 337 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 DLK1P80370 383 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 UNC119Q13432 240 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 DCAF12Q5T6F0 453 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 AWAT2Q6E213 333 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 CRIP3Q6Q6R5 217 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 HIST3H2BBQ8N257 126 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 OR8B12Q8NGG6 310 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 OR4C16Q8NGL9 310 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 GALMQ96C23 342 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 ZNF837Q96EG3 531 aaPredicted RBP4.38□□□□□ -1.71
TMEM260-210ENST00000556422 CYYR1Q96J86 154 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SNX22Q96L94 193 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SEC61A2Q9H9S3 476 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 SLC17A5Q9NRA2 495 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 DKK4Q9UBT3 224 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 PIGLQ9Y2B2 252 aa4.38□□□□□ -1.71
TMEM260-210ENST00000556422 DOCK7Q96N67 2140 aa4.37□□□□□ -1.71
TMEM260-210ENST00000556422 MEIS3P1A6NDR6 274 aa4.37□□□□□ -1.71
TMEM260-210ENST00000556422 NAP1L6A6NFF2 107 aa4.37□□□□□ -1.71
TMEM260-210ENST00000556422 IFNL4K9M1U5 179 aa4.37□□□□□ -1.71
TMEM260-210ENST00000556422 DEGS1O15121 323 aa4.37□□□□□ -1.71
TMEM260-210ENST00000556422 CD59P13987 128 aa4.37□□□□□ -1.71
TMEM260-210ENST00000556422 PPOXP50336 477 aa4.37□□□□□ -1.71
TMEM260-210ENST00000556422 CLDN15P56746 228 aa4.37□□□□□ -1.71
TMEM260-210ENST00000556422 RPS20P60866 119 aaKnown RBP4.37□□□□□ -1.71
TMEM260-210ENST00000556422 QRFPP83859 136 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms