RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 SSBP4Q9BWG4 385 aaPredicted RBP8.15□□□□□ -1.1
SIX4-202ENST00000554079 SFXN3Q9BWM7 321 aa8.15□□□□□ -1.1
SIX4-202ENST00000554079 TMEM222Q9H0R3 208 aa8.15□□□□□ -1.1
SIX4-202ENST00000554079 MOB1AQ9H8S9 216 aa8.15□□□□□ -1.1
SIX4-202ENST00000554079 SLC39A9Q9NUM3 307 aa8.15□□□□□ -1.1
SIX4-202ENST00000554079 NECAP2Q9NVZ3 263 aa8.15□□□□□ -1.1
SIX4-202ENST00000554079 HCFC1R1Q9NWW0 138 aa8.15□□□□□ -1.1
SIX4-202ENST00000554079 PGPEP1Q9NXJ5 209 aa8.15□□□□□ -1.1
SIX4-202ENST00000554079 CD207Q9UJ71 328 aa8.15□□□□□ -1.1
SIX4-202ENST00000554079 PTRH2Q9Y3E5 179 aaKnown RBP8.15□□□□□ -1.1
SIX4-202ENST00000554079 RALGAPA1Q6GYQ0 2036 aa8.15□□□□□ -1.1
SIX4-202ENST00000554079 COL4A6Q14031 1691 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 IFI6P09912 130 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 ZNF20P17024 532 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 EN2P19622 333 aaPredicted RBP8.15□□□□□ -1.11
SIX4-202ENST00000554079 ZNF10P21506 573 aaPredicted RBP8.15□□□□□ -1.11
SIX4-202ENST00000554079 FUT6P51993 359 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 TBR1Q16650 682 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 LRRC75BQ2VPJ9 315 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 KIAA1644Q3SXP7 199 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 KIAA0895LQ68EN5 471 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 COLCA1Q6ZS62 124 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 C1QL2Q7Z5L3 287 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 LINC00346Q8IVM7 164 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 SHISA5Q8N114 240 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 RPP25LQ8N5L8 163 aaKnown RBP8.15□□□□□ -1.11
SIX4-202ENST00000554079 OR2Z1Q8NG97 314 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 EAF1Q96JC9 268 aaPredicted RBP8.15□□□□□ -1.11
SIX4-202ENST00000554079 CCDC3Q9BQI4 270 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 PBOV1Q9GZY1 135 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 CHODLQ9H9P2 273 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 MBNL1Q9NR56 388 aaKnown RBP8.15□□□□□ -1.11
SIX4-202ENST00000554079 THYN1Q9P016 225 aa8.15□□□□□ -1.11
SIX4-202ENST00000554079 C3orf85A0A1B0GTC6 90 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 GAGE10A6NGK3 116 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 C11orf98E9PRG8 122 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 SLC25A17O43808 307 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 TNFP01375 233 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 CYC1P08574 325 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 FRMD6-AS1P0C7T7 363 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 WASP42768 502 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 LGALS4P56470 323 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 RPL27P61353 136 aaKnown RBP8.14□□□□□ -1.11
SIX4-202ENST00000554079 PRTGQ2VWP7 1150 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 HLA-BQ31612 363 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 C9orf135Q5VTT2 229 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 C12orf54Q6X4T0 127 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 C6orf201Q7Z4U5 140 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 VN1R4Q7Z5H5 301 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.14□□□□□ -1.11
SIX4-202ENST00000554079 UEVLDQ8IX04 471 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 SPSB1Q96BD6 273 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 ZNF524Q96C55 264 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 SPACA9Q96E40 222 aaPredicted RBP8.14□□□□□ -1.11
SIX4-202ENST00000554079 LIN37Q96GY3 246 aaPredicted RBP8.14□□□□□ -1.11
SIX4-202ENST00000554079 JMJD8Q96S16 334 aa8.14□□□□□ -1.11
SIX4-202ENST00000554079 COA3Q9Y2R0 106 aaPredicted RBP8.14□□□□□ -1.11
SIX4-202ENST00000554079 TRBV9A0A0B4J1U6 114 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 MDFIC2A0A1B0GVS7 189 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 FCN1O00602 326 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 PLPP3O14495 311 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 NXPH3O95157 252 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 CRYGCP07315 174 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 PEBP1P30086 187 aaKnown RBP8.13□□□□□ -1.11
SIX4-202ENST00000554079 GPR1P46091 355 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 RRADP55042 308 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 OR1D5P58170 312 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 GNB1P62873 340 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 ARL16Q0P5N6 197 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 MLF2Q15773 248 aaPredicted RBP8.13□□□□□ -1.11
SIX4-202ENST00000554079 ACKR1Q16570 336 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 POM121L1PQ3SYA9 428 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 ZNF324BQ6AW86 544 aaPredicted RBP8.13□□□□□ -1.11
SIX4-202ENST00000554079 GTF2H5Q6ZYL4 71 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 OR8I2Q8N0Y5 310 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 FAM58AQ8N1B3 248 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 TMEM52Q8NDY8 209 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 TSKUQ8WUA8 353 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 RNF133Q8WVZ7 376 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 ST6GALNAC6Q969X2 333 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 WDR61Q9GZS3 305 aaKnown RBP8.13□□□□□ -1.11
SIX4-202ENST00000554079 SHANK1Q9Y566 2161 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 IGKV1-9A0A0C4DH69 117 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 CTXND1A0A1B0GTU2 59 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 SPAARA0A1B0GVQ0 90 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 FAM231BA6NCW3 169 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 ZNF850A8MQ14 1090 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 KIAA1324LA8MWY0 1029 aaPredicted RBP8.13□□□□□ -1.11
SIX4-202ENST00000554079 SNURFLB1AK76 121 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 H3BP45 60 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 K7EP34 96 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 MPPED1O15442 326 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 PAGE4O60829 102 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 SMIM10L1P0DMW3 83 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 SEC13P55735 322 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 HTD2P86397 168 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 RNPS1Q15287 305 aaKnown RBP8.13□□□□□ -1.11
SIX4-202ENST00000554079 SPATA12Q7Z6I5 190 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 OR51E1Q8TCB6 317 aa8.13□□□□□ -1.11
SIX4-202ENST00000554079 SMIM10Q96HG1 83 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms