RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 PYCR3Q53H96 274 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 LCN8Q6JVE9 175 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 LRP11Q86VZ4 500 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 PIGXQ8TBF5 258 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 HIST1H2BAQ96A08 127 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 CDCA4Q9BXL8 241 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 PARD6GQ9BYG4 376 aaPredicted RBP2.69□□□□□ -1.98
SCFD1-209ENST00000553280 DERL2Q9GZP9 239 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 EIF5A2Q9GZV4 153 aaKnown RBP2.69□□□□□ -1.98
SCFD1-209ENST00000553280 MED28Q9H204 178 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 SLC23A2Q9UGH3 650 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 OR51B4Q9Y5P0 310 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 R4GN34 69 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 MYO5BQ9ULV0 1848 aa2.69□□□□□ -1.98
SCFD1-209ENST00000553280 C9orf84Q5VXU9 1444 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 GGTLC3B5MD39 225 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 C21orf140B9A014 251 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 EEF1E1O43324 174 aaKnown RBP2.68□□□□□ -1.98
SCFD1-209ENST00000553280 OPN1SWP03999 348 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 IL6P05231 212 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 CXCL2P19875 107 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 CXCL3P19876 107 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 HSPA9P38646 679 aaKnown RBP2.68□□□□□ -1.98
SCFD1-209ENST00000553280 CXCR4P61073 352 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 EBPQ15125 230 aaKnown RBP2.68□□□□□ -1.98
SCFD1-209ENST00000553280 PDGFRLQ15198 375 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 SLC9A3R2Q15599 337 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 OR8G1Q15617 311 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 LGALSLQ3ZCW2 172 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-209ENST00000553280 AMMECR1LQ6DCA0 310 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 TNFAIP8L2Q6P589 184 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-209ENST00000553280 LRRN1Q6UXK5 716 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 LYPD1Q8N2G4 141 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 OR8J2Q8NGG1 315 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 CD200R1Q8TD46 325 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 ZNF721Q8TF20 911 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 TMBIM1Q969X1 311 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 RTBDNQ9BSG5 229 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-209ENST00000553280 ABCG5Q9H222 651 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 ASF1BQ9NVP2 202 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 MRPS16Q9Y3D3 137 aaKnown RBP2.68□□□□□ -1.98
SCFD1-209ENST00000553280 ZBED9Q6R2W3 1325 aa2.68□□□□□ -1.98
SCFD1-209ENST00000553280 GPR179Q6PRD1 2367 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 CEP170Q5SW79 1584 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 CPSF4O95639 269 aaKnown RBP2.67□□□□□ -1.98
SCFD1-209ENST00000553280 HLA-DRAP01903 254 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 CD5P06127 495 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 HRES1P13985 223 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 CDK2P24941 298 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 ACTBP60709 375 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 ACTG1P63261 375 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 HPCAP84074 193 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 BSPH1Q075Z2 132 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 TMEM267Q0VDI3 215 aaPredicted RBP2.67□□□□□ -1.98
SCFD1-209ENST00000553280 TSPAN31Q12999 210 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 PDK2Q15119 407 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 KRTAP25-1Q3LHN0 102 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 SPIN4Q56A73 249 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 ACSBG2Q5FVE4 666 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 EIF4E3Q8N5X7 224 aaKnown RBP2.67□□□□□ -1.98
SCFD1-209ENST00000553280 Q8NAQ8 132 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 PTH2Q96A98 100 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 MAP1LC3AQ9H492 121 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 DNAJC12Q9UKB3 198 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 FIS1Q9Y3D6 152 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 HDGFL3Q9Y3E1 203 aa2.67□□□□□ -1.98
SCFD1-209ENST00000553280 NID2Q14112 1375 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 A0A1B0GU33 70 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 D6RAR5 112 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 IGLV3-27P01718 113 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 RNASE2P10153 161 aaKnown RBP2.66□□□□□ -1.98
SCFD1-209ENST00000553280 NQO1P15559 274 aaKnown RBP2.66□□□□□ -1.98
SCFD1-209ENST00000553280 ZNF708P17019 499 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 OR1E2P47887 323 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 AP2S1P53680 142 aaPredicted RBP2.66□□□□□ -1.98
SCFD1-209ENST00000553280 LINC00313P59037 77 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 DEFA6Q01524 100 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 CD200R1LQ6Q8B3 271 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 ATP5L2Q7Z4Y8 100 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 C10orf67Q8IYJ2 551 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 EEF1AKMT1Q8WVE0 214 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 ABHD14BQ96IU4 210 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 WASHC3Q9Y3C0 194 aa2.66□□□□□ -1.98
SCFD1-209ENST00000553280 SLC25A20O43772 301 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 IFNA5P01569 189 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 IGKV1-17P01599 117 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 RPL12P30050 165 aaKnown RBP2.65□□□□□ -1.99
SCFD1-209ENST00000553280 OPRM1P35372 400 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 NKX2-5P52952 324 aaPredicted RBP2.65□□□□□ -1.99
SCFD1-209ENST00000553280 KRTAP10-1P60331 282 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 FGF12P61328 243 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 RPS24P62847 133 aaKnown RBP2.65□□□□□ -1.99
SCFD1-209ENST00000553280 FABP5Q01469 135 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 ITGB3BPQ13352 177 aaPredicted RBP2.65□□□□□ -1.99
SCFD1-209ENST00000553280 PPP1R1AQ13522 171 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 RGS21Q2M5E4 152 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 DCXRQ7Z4W1 244 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 HS3ST5Q8IZT8 346 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 ZFAND2AQ8N6M9 145 aa2.65□□□□□ -1.99
SCFD1-209ENST00000553280 OR2V1Q8NHB1 315 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms