RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 MEOX2P50222 304 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 AP1S2P56377 157 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 KRTAP10-12P60413 245 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 GNB2P62879 340 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 SLC35B1P78383 322 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 PRB3Q04118 309 aaPredicted RBP2.73□□□□□ -1.97
LIMA1-208ENST00000551691 EMX1Q04741 257 aaPredicted RBP2.73□□□□□ -1.97
LIMA1-208ENST00000551691 ZNF763Q0D2J5 394 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 FOXF1Q12946 379 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 C5orf64Q2M2E5 130 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 MRGPRG-AS1Q2M3A8 158 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 ATP6AP1LQ52LC2 224 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 CLEC6AQ6EIG7 209 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 SSX8Q7RTT4 187 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 SSX6Q7RTT6 188 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 ABHD12BQ7Z5M8 362 aaPredicted RBP2.73□□□□□ -1.97
LIMA1-208ENST00000551691 RNF10Q8N5U6 811 aaKnown RBP2.73□□□□□ -1.97
LIMA1-208ENST00000551691 LINC00469Q8N7U9 141 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 CHST4Q8NCG5 386 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 OR8U1Q8NH10 309 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 CDKL2Q92772 493 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 CPNE4Q96A23 557 aaPredicted RBP2.73□□□□□ -1.97
LIMA1-208ENST00000551691 CENPNQ96H22 339 aaPredicted RBP2.73□□□□□ -1.97
LIMA1-208ENST00000551691 COPS4Q9BT78 406 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 ZNF717Q9BY31 904 aaPredicted RBP2.73□□□□□ -1.97
LIMA1-208ENST00000551691 ZNF442Q9H7R0 627 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 SPACA1Q9HBV2 294 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 SDHAF3Q9NRP4 125 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 PAK5Q9P286 719 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 UVRAGQ9P2Y5 699 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 NOSIPQ9Y314 301 aaKnown RBP2.73□□□□□ -1.97
LIMA1-208ENST00000551691 RNF213Q63HN8 5207 aa2.73□□□□□ -1.97
LIMA1-208ENST00000551691 A0A0A6YYD5 115 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 IGKV1D-13A0A0B4J2D9 117 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 IGHV1-69-2A0A0G2JMI3 117 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 CENPVL3A0A0U1RRI6 287 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 GABRPO00591 440 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 MRPL33O75394 65 aaKnown RBP2.72□□□□□ -1.97
LIMA1-208ENST00000551691 DEDDO75618 318 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 GCGP01275 180 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 IGKV1-13P0DP09 117 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 ZNF14P17017 642 aaPredicted RBP2.72□□□□□ -1.97
LIMA1-208ENST00000551691 RAB3BP20337 219 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 RAB4AP20338 218 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 ME2P23368 584 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 MYL9P24844 172 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 IVDP26440 423 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 BTCP35070 178 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 HRH1P35367 487 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 EVX1P49640 407 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 FOXA1P55317 472 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 TAS2R60P59551 318 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 FGF12P61328 243 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 VSNL1P62760 191 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 SARNPP82979 210 aaKnown RBP2.72□□□□□ -1.97
LIMA1-208ENST00000551691 MXD1Q05195 221 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 ZNF266Q14584 549 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 ZNF726P1Q15940 193 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 LCE1FQ5T754 118 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 KRTAP5-4Q6L8H1 288 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 BAIAP2L2Q6UXY1 529 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 GTSCR1Q86UQ5 136 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 TMEM86BQ8N661 226 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 NOXO1Q8NFA2 376 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 TTLQ8NG68 377 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 CLHC1Q8NHS4 586 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 TYMSOSQ8TAI1 123 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 IFT81Q8WYA0 676 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 RPEQ96AT9 228 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 RPUSD4Q96CM3 377 aaKnown RBP2.72□□□□□ -1.97
LIMA1-208ENST00000551691 LRRC45Q96CN5 670 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 AURKBQ96GD4 344 aaPredicted RBP2.72□□□□□ -1.97
LIMA1-208ENST00000551691 TMEM101Q96IK0 257 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 TSSK3Q96PN8 268 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 NRIP2Q9BQI9 281 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 FRMD8P1Q9BZ68 369 aaPredicted RBP2.72□□□□□ -1.97
LIMA1-208ENST00000551691 TBL1XR1Q9BZK7 514 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 OR11A1Q9GZK7 315 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 ZNF702PQ9H963 129 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 EDA2RQ9HAV5 297 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 NOX3Q9HBY0 568 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 SLCO1B3Q9NPD5 702 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 CCL28Q9NRJ3 127 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 MS4A12Q9NXJ0 267 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 TAAR3PQ9P1P4 343 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 CES1P1Q9UKY3 287 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 TFR2Q9UP52 801 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 ST3GAL6Q9Y274 331 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 ZNF256Q9Y2P7 627 aaPredicted RBP2.72□□□□□ -1.97
LIMA1-208ENST00000551691 KCNE3Q9Y6H6 103 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 USH1CQ9Y6N9 552 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 MYCBP2O75592 4640 aa2.72□□□□□ -1.97
LIMA1-208ENST00000551691 IGLV3-32A0A0A0MS00 114 aa2.71□□□□□ -1.98
LIMA1-208ENST00000551691 A0A1B0GW15 77 aa2.71□□□□□ -1.98
LIMA1-208ENST00000551691 TRPC5OSA6NMA1 111 aa2.71□□□□□ -1.98
LIMA1-208ENST00000551691 GJE1A6NN92 205 aa2.71□□□□□ -1.98
LIMA1-208ENST00000551691 CLDN25C9JDP6 229 aa2.71□□□□□ -1.98
LIMA1-208ENST00000551691 NME4O00746 187 aa2.71□□□□□ -1.98
LIMA1-208ENST00000551691 ENSAO43768 121 aaKnown RBP2.71□□□□□ -1.98
LIMA1-208ENST00000551691 SUPT7LO94864 414 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms