RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ZNF554Q86TJ5 538 aa12.97□□□□□ -0.33
VPS29-204ENST00000548259 LHFPL3Q86UP9 236 aa12.97□□□□□ -0.33
VPS29-204ENST00000548259 PPP1R27Q86WC6 154 aa12.97□□□□□ -0.33
VPS29-204ENST00000548259 CASTOR1Q8WTX7 329 aa12.97□□□□□ -0.33
VPS29-204ENST00000548259 MRPS24Q96EL2 167 aaKnown RBP12.97□□□□□ -0.33
VPS29-204ENST00000548259 JPT1Q9UK76 154 aa12.97□□□□□ -0.33
VPS29-204ENST00000548259 EXOGQ9Y2C4 368 aaKnown RBP12.97□□□□□ -0.33
VPS29-204ENST00000548259 C13orf42A0A1B0GVH6 325 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 RRHO14718 337 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 FADS2O95864 444 aaKnown RBP12.96□□□□□ -0.33
VPS29-204ENST00000548259 TFAP2AP05549 437 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 BDKRB2P30411 391 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 SNRPGP62308 76 aaKnown RBP12.96□□□□□ -0.33
VPS29-204ENST00000548259 MOGAT2Q3SYC2 334 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 RAB12Q6IQ22 244 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 UNQ5815/PRO19632Q6UWF5 114 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 OR2AK2Q8NG84 335 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 RBMXL1Q96E39 390 aaKnown RBP12.96□□□□□ -0.33
VPS29-204ENST00000548259 RITA1Q96K30 269 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 RHOVQ96L33 236 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 MS4A10Q96PG2 267 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 KRTAP17-1Q9BYP8 105 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 TAF9BQ9HBM6 251 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 CNOT2Q9NZN8 540 aaKnown RBP12.96□□□□□ -0.33
VPS29-204ENST00000548259 AP4S1Q9Y587 144 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 NUBP2Q9Y5Y2 271 aa12.96□□□□□ -0.33
VPS29-204ENST00000548259 A0A0G2JLM5 398 aa12.95□□□□□ -0.34
VPS29-204ENST00000548259 TRGV3P03979 118 aa12.95□□□□□ -0.34
VPS29-204ENST00000548259 GSTP1P09211 210 aaKnown RBP12.95□□□□□ -0.34
VPS29-204ENST00000548259 NDPQ00604 133 aa12.95□□□□□ -0.34
VPS29-204ENST00000548259 AMIGO2Q86SJ2 522 aa12.95□□□□□ -0.34
VPS29-204ENST00000548259 TMEM106AQ96A25 262 aa12.95□□□□□ -0.34
VPS29-204ENST00000548259 FBXL15Q9H469 300 aa12.95□□□□□ -0.34
VPS29-204ENST00000548259 ISG20L2Q9H9L3 353 aaKnown RBP12.95□□□□□ -0.34
VPS29-204ENST00000548259 RCC2Q9P258 522 aaKnown RBP12.95□□□□□ -0.34
VPS29-204ENST00000548259 LRRC42Q9Y546 428 aa12.95□□□□□ -0.34
VPS29-204ENST00000548259 GMPPBQ9Y5P6 360 aa12.95□□□□□ -0.34
VPS29-204ENST00000548259 PEX16Q9Y5Y5 336 aa12.95□□□□□ -0.34
VPS29-204ENST00000548259 RBBP9O75884 186 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 GLAP06280 429 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 RCC1P18754 421 aaPredicted RBP12.94□□□□□ -0.34
VPS29-204ENST00000548259 MC5RP33032 325 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 HTD2P86397 168 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 FAM71F2Q6NXP2 309 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 ZNF833PQ6ZTB9 187 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 Q8N402 240 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 OR9G4Q8NGQ1 327 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 LGALS12Q96DT0 336 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 ZNF355PQ9NSJ1 428 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 PIPOXQ9P0Z9 390 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 CKLFQ9UBR5 152 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 FBXO7Q9Y3I1 522 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 CEPT1Q9Y6K0 416 aa12.94□□□□□ -0.34
VPS29-204ENST00000548259 SHISA3A0PJX4 238 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 OR5H14A6NHG9 310 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 YPEL1O60688 119 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 PPP1CCP36873 323 aaKnown RBP12.93□□□□□ -0.34
VPS29-204ENST00000548259 ADARB1P78563 741 aaKnown RBP12.93□□□□□ -0.34
VPS29-204ENST00000548259 RIPK1Q13546 671 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 ZNF562Q6V9R5 426 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 GAPTQ8N292 157 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 OR52L2PQ8NGH6 319 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 GALMQ96C23 342 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 Q96MT0 163 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 RDH12Q96NR8 316 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 YPEL2Q96QA6 119 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 STEAP1Q9UHE8 339 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 OAZ3Q9UMX2 235 aa12.93□□□□□ -0.34
VPS29-204ENST00000548259 SAA2-SAA4A0A096LPE2 208 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 E9PI62 339 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 H3BUA1 57 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 H7C2Y5 167 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 TPPPO94811 219 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 MAS1P04201 325 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 SAA2P0DJI9 122 aaPredicted RBP12.92□□□□□ -0.34
VPS29-204ENST00000548259 LY6G6FQ5SQ64 297 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 FAM131AQ6UXB0 335 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 ODF3L1Q8IXM7 274 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 LFNGQ8NES3 379 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 CENPNQ96H22 339 aaPredicted RBP12.92□□□□□ -0.34
VPS29-204ENST00000548259 ZNF184Q99676 751 aaPredicted RBP12.92□□□□□ -0.34
VPS29-204ENST00000548259 RNF5Q99942 180 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 HIPK2Q9H2X6 1198 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 MBNL3Q9NUK0 354 aaKnown RBP12.92□□□□□ -0.34
VPS29-204ENST00000548259 ERVK13-1Q9NX77 482 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 ABRACLQ9P1F3 81 aa12.92□□□□□ -0.34
VPS29-204ENST00000548259 FAM90A7PA6NKC0 464 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 FAM90A23PA8MXZ1 464 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 RAB29O14966 203 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 SLC22A1O15245 554 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 FUT3P21217 361 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 OR3A3P47888 321 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 KLF5Q13887 457 aaPredicted RBP12.91□□□□□ -0.34
VPS29-204ENST00000548259 GNMTQ14749 295 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 CCDC58Q4VC31 144 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 C6orf141Q5SZD1 244 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 OR2K2Q8NGT1 345 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 SIGLEC8Q9NYZ4 499 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 WASHC3Q9Y3C0 194 aa12.91□□□□□ -0.34
VPS29-204ENST00000548259 A0A1W2PP11 408 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms