RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ZNF57	Q68EA5	555 aa	Predicted RBP	8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	LYSMD2	Q8IV50	215 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	TMEM229B	Q8NBD8	167 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	EDARADD	Q8WWZ3	215 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	ZDHHC16	Q969W1	377 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	ABHD14A	Q9BUJ0	271 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	SRR	Q9GZT4	340 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	C11orf54	Q9H0W9	315 aa	Predicted RBP	8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	MMP28	Q9H239	520 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	TAS2R8	Q9NYW2	309 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	ZNRD1	Q9P1U0	126 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	RNF150	Q9ULK6	438 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	ANAPC10	Q9UM13	185 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	CR1	P17927	2039 aa		8.27	□□□□□ -1.09
CPSF7-221	ENST00000543545	HIVEP1	P15822	2718 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	TLN2	Q9Y4G6	2542 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545		A0A0U1RQK1	487 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	LINC00854	A0A1B0GVQ3	168 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	LEUTX	A8MZ59	168 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	SLC31A2	O15432	143 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	ST8SIA5	O15466	376 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	LANCL1	O43813	399 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	RAB3D	O95716	219 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	CD3D	P04234	171 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	OR8U9	P0C7N5	309 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	SAA4	P35542	130 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	RAB7A	P51149	207 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	ZNF134	P52741	427 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	AP3S2	P59780	193 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	ZNF846	Q147U1	533 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	HLA-DRB5	Q30154	266 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545		Q3ZCU0	254 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	CT45A1	Q5HYN5	189 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	ZNF626	Q68DY1	528 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	LHFPL4	Q7Z7J7	247 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	TMEM17	Q86X19	198 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	H1FOO	Q8IZA3	346 aa	Predicted RBP	8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	BCL6B	Q8N143	479 aa	Predicted RBP	8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	LYG1	Q8N1E2	194 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	MFSD4A	Q8N468	514 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	TOMM5	Q8N4H5	51 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	PIP4P2	Q8N4L2	257 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	BEND2	Q8NDZ0	799 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	OR6F1	Q8NGZ6	308 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	OR8U1	Q8NH10	309 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	CT45A3	Q8NHU0	189 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	RPE	Q96AT9	228 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	CREB3L1	Q96BA8	519 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	WDR12	Q9GZL7	423 aa	Known RBP	8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	PARP12	Q9H0J9	701 aa	Known RBP	8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	OCEL1	Q9H607	264 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	AKIP1	Q9NQ31	210 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	DPM3	Q9P2X0	92 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	ZNF221	Q9UK13	617 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	HILPDA	Q9Y5L2	63 aa		8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	SOX21	Q9Y651	276 aa	Predicted RBP	8.26	□□□□□ -1.09
CPSF7-221	ENST00000543545	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	8.25	□□□□□ -1.09	1e-7	■■■□□ 19.2
CPSF7-221	ENST00000543545	ODF3B	A8MYP8	253 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	DISC1	C4P0D8	188 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	BUB1B-PAK6	H3BSN5	160 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	FSHB	P01225	129 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	TBP	P20226	339 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	CEACAM3	P40198	252 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	GPR12	P47775	334 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	LUM	P51884	338 aa	Predicted RBP	8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	FXYD4	P59646	89 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	HERV-K104	P61576	105 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	DYRK1A	Q13627	763 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	SSX2	Q16385	188 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	PLA1A	Q53H76	456 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	KIAA2026	Q5HYC2	2103 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	MINOS1	Q5TGZ0	78 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	STEAP1B	Q6NZ63	245 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	RBMS3	Q6XE24	437 aa	Known RBP	8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	SLC25A48	Q6ZT89	311 aa	Known RBP	8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	OVCH2	Q7RTZ1	564 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	LINC00311	Q8N616	119 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	C8orf31	Q8N9H6	132 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	OR4P4	Q8NGL7	312 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	C17orf50	Q8WW18	174 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	ABHD14B	Q96IU4	210 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	ZNF2	Q9BSG1	426 aa	Predicted RBP	8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	TINAGL1	Q9GZM7	467 aa	Predicted RBP	8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	MCUB	Q9NWR8	336 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	ZNF107	Q9UII5	783 aa	Predicted RBP	8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	RBMX2	Q9Y388	322 aa	Known RBP	8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	OR2W1	Q9Y3N9	320 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	TBL2	Q9Y4P3	447 aa	Known RBP	8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	MINOS1-NBL1	R4GNA1	71 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	ZNF469	Q96JG9	3925 aa	Predicted RBP	8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	DOCK11	Q5JSL3	2073 aa		8.25	□□□□□ -1.09
CPSF7-221	ENST00000543545	ABCA2	Q9BZC7	2435 aa		8.24	□□□□□ -1.09
CPSF7-221	ENST00000543545	ITGB1BP1	O14713	200 aa		8.24	□□□□□ -1.09
CPSF7-221	ENST00000543545	RAB29	O14966	203 aa		8.24	□□□□□ -1.09
CPSF7-221	ENST00000543545	CRLF1	O75462	422 aa		8.24	□□□□□ -1.09
CPSF7-221	ENST00000543545	IGLV1-47	P01700	117 aa		8.24	□□□□□ -1.09
CPSF7-221	ENST00000543545	AMY2A	P04746	511 aa		8.24	□□□□□ -1.09
CPSF7-221	ENST00000543545	FBP1	P09467	338 aa		8.24	□□□□□ -1.09
CPSF7-221	ENST00000543545	AKAIN1	P0CW23	69 aa		8.24	□□□□□ -1.09

Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms