RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 GSTZ1O43708 216 aaPredicted RBP13.91□□□□□ -0.18
LIG1-204ENST00000542460 HLA-DRB5Q30154 266 aa13.91□□□□□ -0.18
LIG1-204ENST00000542460 PYDC2Q56P42 97 aa13.91□□□□□ -0.18
LIG1-204ENST00000542460 SLC25A48Q6ZT89 311 aaKnown RBP13.91□□□□□ -0.18
LIG1-204ENST00000542460 LYSMD2Q8IV50 215 aa13.91□□□□□ -0.18
LIG1-204ENST00000542460 ZNF439Q8NDP4 499 aa13.91□□□□□ -0.18
LIG1-204ENST00000542460 OR2AK2Q8NG84 335 aa13.91□□□□□ -0.18
LIG1-204ENST00000542460 OR4P4Q8NGL7 312 aa13.91□□□□□ -0.18
LIG1-204ENST00000542460 CREB3L1Q96BA8 519 aa13.91□□□□□ -0.18
LIG1-204ENST00000542460 GINS4Q9BRT9 223 aa13.91□□□□□ -0.18
LIG1-204ENST00000542460 TOLLIPQ9H0E2 274 aa13.91□□□□□ -0.18
LIG1-204ENST00000542460 NECAP2Q9NVZ3 263 aa13.91□□□□□ -0.18
LIG1-204ENST00000542460 A0A1W2PPE3 182 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 HTR1DP28221 377 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 ZNF134P52741 427 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 TAS2R46P59540 309 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 ZNF45Q02386 682 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 ZNF79Q15937 498 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 CT45A1Q5HYN5 189 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 MINOS1Q5TGZ0 78 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 OR10X1Q8NGY0 326 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 CT45A3Q8NHU0 189 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 EDARADDQ8WWZ3 215 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 C22orf15Q8WYQ4 148 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 RDH8Q9NYR8 311 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 FAM96BQ9Y3D0 163 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 AMMECR1Q9Y4X0 333 aaPredicted RBP13.9□□□□□ -0.18
LIG1-204ENST00000542460 MINOS1-NBL1R4GNA1 71 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 NAV3Q8IVL0 2385 aa13.9□□□□□ -0.18
LIG1-204ENST00000542460 A0A0U1RQK1 487 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 BUB1B-PAK6H3BSN5 160 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 ITGB1BP1O14713 200 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 FAM157CP0CG43 387 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 HLA-DMAP28067 261 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 OR3A3P47888 321 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 CDK10Q15131 360 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 LHFPL4Q7Z7J7 247 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 BCL6BQ8N143 479 aaPredicted RBP13.9□□□□□ -0.19
LIG1-204ENST00000542460 Q8N402 240 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 MALSU1Q96EH3 234 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 ABHD14AQ9BUJ0 271 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 ZNRD1Q9P1U0 126 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 DPM3Q9P2X0 92 aa13.9□□□□□ -0.19
LIG1-204ENST00000542460 ZNF107Q9UII5 783 aaPredicted RBP13.9□□□□□ -0.19
LIG1-204ENST00000542460 RBMX2Q9Y388 322 aaKnown RBP13.9□□□□□ -0.19
LIG1-204ENST00000542460 ANK3Q12955 4377 aaKnown RBP13.89□□□□□ -0.19
LIG1-204ENST00000542460 LEUTXA8MZ59 168 aa13.89□□□□□ -0.19
LIG1-204ENST00000542460 SLC31A2O15432 143 aa13.89□□□□□ -0.19
LIG1-204ENST00000542460 CEACAM3P40198 252 aa13.89□□□□□ -0.19
LIG1-204ENST00000542460 RAB7AP51149 207 aa13.89□□□□□ -0.19
LIG1-204ENST00000542460 H1FOOQ8IZA3 346 aaPredicted RBP13.89□□□□□ -0.19
LIG1-204ENST00000542460 OR5H2Q8NGV7 314 aa13.89□□□□□ -0.19
LIG1-204ENST00000542460 THAP7Q9BT49 309 aaPredicted RBP13.89□□□□□ -0.19
LIG1-204ENST00000542460 C11orf54Q9H0W9 315 aaPredicted RBP13.89□□□□□ -0.19
LIG1-204ENST00000542460 TAS2R8Q9NYW2 309 aa13.89□□□□□ -0.19
LIG1-204ENST00000542460 SOX21Q9Y651 276 aaPredicted RBP13.89□□□□□ -0.19
LIG1-204ENST00000542460 ZNF736B4DX44 427 aaPredicted RBP13.88□□□□□ -0.19
LIG1-204ENST00000542460 PMP2P02689 132 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 FBP1P09467 338 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 OR5H8P0DN80 308 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 HRH1P35367 487 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 RFX2P48378 723 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 LDLRAD2Q5SZI1 272 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 OVCH2Q7RTZ1 564 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 GDPD1Q8N9F7 314 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 C17orf50Q8WW18 174 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 AJUBAQ96IF1 538 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 SRRQ9GZT4 340 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 PARP12Q9H0J9 701 aaKnown RBP13.88□□□□□ -0.19
LIG1-204ENST00000542460 GHITMQ9H3K2 345 aa13.88□□□□□ -0.19
LIG1-204ENST00000542460 FN1P02751 2386 aaKnown RBP13.87□□□□□ -0.19
LIG1-204ENST00000542460 LY6LH3BQJ8 138 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 CSF1P09603 554 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 TBPP20226 339 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 NFYAP23511 347 aaPredicted RBP13.87□□□□□ -0.19
LIG1-204ENST00000542460 IL3RAP26951 378 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 TAS2R19P59542 299 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 DEFB112Q30KQ8 113 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 ACTBL2Q562R1 376 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 MFSD4AQ8N468 514 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 TMEM229BQ8NBD8 167 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 FAM216AQ8WUB2 273 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 S100ZQ8WXG8 99 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 AGMATQ9BSE5 352 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 AKIP1Q9NQ31 210 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 EHFQ9NZC4 300 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 MXRA5Q9NR99 2828 aa13.87□□□□□ -0.19
LIG1-204ENST00000542460 ST8SIA5O15466 376 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 CD3DP04234 171 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 FCGR2CP31995 323 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 DYRK1AQ13627 763 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 SSX2Q16385 188 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 TUSC1Q2TAM9 212 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 DHRS11Q6UWP2 260 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 LYG1Q8N1E2 194 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 GIMAP1Q8WWP7 306 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 SLC6A7Q99884 636 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 IFI27L2Q9H2X8 130 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 PRDM13Q9H4Q3 707 aa13.86□□□□□ -0.19
LIG1-204ENST00000542460 PIPOXQ9P0Z9 390 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms