RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 VCXQ9H320 206 aa11.53□□□□□ -0.56
VPS28-215ENST00000531924 COL7A1Q02388 2944 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 NBR2O15453 112 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 YPEL1O60688 119 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 GNAO1P09471 354 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 OR8U8P0C7N1 319 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 PSMB8P28062 276 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 CFHR3Q02985 330 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 GABPB1Q06547 395 aaPredicted RBP11.52□□□□□ -0.57
VPS28-215ENST00000531924 ZNF260Q3ZCT1 412 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 ACSM3Q53FZ2 586 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 RBM48Q5RL73 367 aaKnown RBP11.52□□□□□ -0.57
VPS28-215ENST00000531924 SIGIRRQ6IA17 410 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 LIN54Q6MZP7 749 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 NANOGP1Q8N7R0 232 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 OR11H1Q8NG94 326 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 OR1N2Q8NGR9 330 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 RBMXL1Q96E39 390 aaKnown RBP11.52□□□□□ -0.57
VPS28-215ENST00000531924 YPEL2Q96QA6 119 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 PRR25Q96S07 402 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 TMEM59Q9BXS4 323 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 OR51J1Q9H342 316 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 PLCXD1Q9NUJ7 323 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 ZNF580Q9UK33 172 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 VSIG4Q9Y279 399 aa11.52□□□□□ -0.57
VPS28-215ENST00000531924 TRAV41A0A0B4J266 112 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 LY86O95711 162 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 HLA-DRB1P01911 266 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 OR3A3P47888 321 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 PLGLAQ15195 96 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 KCNG3Q8TAE7 436 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 UBE2E2Q96LR5 201 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 OR5B12Q96R08 314 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 NABP2Q9BQ15 211 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 SULT4A1Q9BR01 284 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 FAAP24Q9BTP7 215 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 TMED9Q9BVK6 235 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 MND1Q9BWT6 205 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 NBEAL2Q6ZNJ1 2754 aa11.51□□□□□ -0.57
VPS28-215ENST00000531924 SAA2-SAA4A0A096LPE2 208 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 G3V318 75 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 ATP6V0E1O15342 81 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 SAA2P0DJI9 122 aaPredicted RBP11.5□□□□□ -0.57
VPS28-215ENST00000531924 CHATP28329 748 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 ZNF616Q08AN1 781 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 C5orf64Q2M2E5 130 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 LY6G6FQ5SQ64 297 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 OR10K2Q6IF99 312 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 ZNF833PQ6ZTB9 187 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 C6orf201Q7Z4U5 140 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 CEACAM19Q7Z692 300 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 C5orf24Q7Z6I8 188 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 LYPD6Q86Y78 171 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 ABHD5Q8WTS1 349 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 PHYHIPQ92561 330 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 ANKRD60Q9BZ19 345 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 KLK15Q9H2R5 256 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 PLEKHJ1Q9NW61 149 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 PIPOXQ9P0Z9 390 aa11.5□□□□□ -0.57
VPS28-215ENST00000531924 DNAH9Q9NYC9 4486 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 PTGES3LE9PB15 166 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 H7C2Y5 167 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 RAB29O14966 203 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 GSTP1P09211 210 aaKnown RBP11.49□□□□□ -0.57
VPS28-215ENST00000531924 VSIG8P0DPA2 414 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 CNTFRP26992 372 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 HTR2CP28335 458 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 BLVRBP30043 206 aaPredicted RBP11.49□□□□□ -0.57
VPS28-215ENST00000531924 INSL3P51460 131 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 RPS27AP62979 156 aaKnown RBP11.49□□□□□ -0.57
VPS28-215ENST00000531924 INSL4Q14641 139 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 HMGN3Q15651 99 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 ECSCRQ19T08 205 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 HSD17B12Q53GQ0 312 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 FAM27D1Q5T7N8 215 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 MOB1BQ7L9L4 216 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 ODF3L1Q8IXM7 274 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 ZNF491Q8N8L2 437 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 RITA1Q96K30 269 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 GNB4Q9HAV0 340 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 SCN3BQ9NY72 215 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 ZNF256Q9Y2P7 627 aaPredicted RBP11.49□□□□□ -0.57
VPS28-215ENST00000531924 U3KQK5 164 aa11.49□□□□□ -0.57
VPS28-215ENST00000531924 TENM3Q9P273 2699 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 IGHV7-81A0A0B4J1V7 117 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 ST8SIA5O15466 376 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 HSPA12AO43301 675 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 CDK1P06493 297 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 SRMP19623 302 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 PPIFP30405 207 aaKnown RBP11.48□□□□□ -0.57
VPS28-215ENST00000531924 MC5RP33032 325 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 RAB9AP51151 201 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 FHL3Q13643 280 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 MED22Q15528 200 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 C1orf100Q5SVJ3 147 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 C6orf141Q5SZD1 244 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 LAIR2Q6ISS4 152 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 FAM71F2Q6NXP2 309 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 FAM131AQ6UXB0 335 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 NPBQ8NG41 125 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms