RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 HKR1P10072 659 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 PPP1CCP36873 323 aaKnown RBP11.5□□□□□ -0.57
NUP54-216ENST00000514901 ZNF134P52741 427 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 ZNF137PP52743 207 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 SPCS2Q15005 226 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 DTX3Q8N9I9 347 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 OR2AK2Q8NG84 335 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 PIFOQ8TCI5 191 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 EDARADDQ8WWZ3 215 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 ABHD14AQ9BUJ0 271 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 AUNIPQ9H7T9 357 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 TXNL1O43396 289 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 CTXN2P0C2S0 81 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 PAX6P26367 422 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 CEACAM6P40199 344 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 ZNF816Q0VGE8 651 aaPredicted RBP11.49□□□□□ -0.57
NUP54-216ENST00000514901 FOXL1Q12952 345 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 GNMTQ14749 295 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 PLA1AQ53H76 456 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 TMEM69Q5SWH9 247 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 DHRS7BQ6IAN0 325 aaPredicted RBP11.49□□□□□ -0.57
NUP54-216ENST00000514901 FAM53AQ6NSI3 398 aaPredicted RBP11.49□□□□□ -0.57
NUP54-216ENST00000514901 C5orf24Q7Z6I8 188 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 THNSL2Q86YJ6 484 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 ST6GALNAC6Q969X2 333 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 ISOC1Q96CN7 298 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 ST6GALNAC5Q9BVH7 336 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 TOLLIPQ9H0E2 274 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 SLC23A1Q9UHI7 598 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 ZNF230Q9UIE0 474 aaPredicted RBP11.49□□□□□ -0.57
NUP54-216ENST00000514901 ELF5Q9UKW6 265 aaPredicted RBP11.49□□□□□ -0.57
NUP54-216ENST00000514901 TCF19Q9Y242 345 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 CEPT1Q9Y6K0 416 aa11.49□□□□□ -0.57
NUP54-216ENST00000514901 A6NDX4 124 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 H3BMQ9 156 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 HSD17B6O14756 317 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 SLC31A2O15432 143 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 NDUFA7O95182 113 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 GSTT2P0CG29 244 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 GSTT2BP0CG30 244 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 FAM106CPP0CH98 169 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 CBX5P45973 191 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 COMPP49747 757 aaPredicted RBP11.48□□□□□ -0.57
NUP54-216ENST00000514901 RAB13P51153 203 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 LY6EQ16553 131 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 LYG1Q8N1E2 194 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 OR10J5Q8NHC4 309 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 SPATA3Q8NHX4 192 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 NUDCD2Q8WVJ2 157 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 CABLES2Q9BTV7 478 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 CCDC59Q9P031 241 aaKnown RBP11.48□□□□□ -0.57
NUP54-216ENST00000514901 PIPOXQ9P0Z9 390 aa11.48□□□□□ -0.57
NUP54-216ENST00000514901 TRBV6-7A0A0A0MS04 114 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 A0A1B0GUS0 222 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 CCDC160A6NGH7 325 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 FAM90A9PA6NNJ1 464 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 ZNF701M0R085 212 aaPredicted RBP11.47□□□□□ -0.57
NUP54-216ENST00000514901 LANCL1O43813 399 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 SSX5O60225 188 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 TPPPO94811 219 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 EIF4EP06730 217 aaKnown RBP11.47□□□□□ -0.57
NUP54-216ENST00000514901 C16orf82Q7Z2V1 217 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 IZUMO1Q8IYV9 350 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 OR4F5Q8NH21 305 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 DYNC2LI1Q8TCX1 351 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 RTN4IP1Q8WWV3 396 aaPredicted RBP11.47□□□□□ -0.57
NUP54-216ENST00000514901 C1RLQ9NZP8 487 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 STAB1Q9NY15 2570 aa11.47□□□□□ -0.57
NUP54-216ENST00000514901 IGHV1-3A0A0C4DH29 117 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 IGKV1-6A0A0C4DH72 117 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 A0A1W2PPI3 338 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 FAM25AB3EWG3 89 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 FAM25CB3EWG5 89 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 FAM25GB3EWG6 89 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 TIMM23O14925 209 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 RAB29O14966 203 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 BET1O15155 118 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 HPGDSO60760 199 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 ELK1P19419 428 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 TAS2R20P59543 309 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 HABP2Q14520 560 aaPredicted RBP11.46□□□□□ -0.57
NUP54-216ENST00000514901 HERPUD1Q15011 391 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 FAM71F2Q6NXP2 309 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 CNIH2Q6PI25 160 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 MOB3BQ86TA1 216 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 HOGA1Q86XE5 327 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 TGIF2LXQ8IUE1 241 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 DRAM1Q8N682 238 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 C15orf40Q8WUR7 153 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 CAPSLQ8WWF8 208 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 MAFIPQ8WZ33 124 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 AKR1E2Q96JD6 320 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 S1PR3Q99500 378 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 GINS4Q9BRT9 223 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 NPFFR1Q9GZQ6 430 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 C11orf54Q9H0W9 315 aaPredicted RBP11.46□□□□□ -0.57
NUP54-216ENST00000514901 RDH8Q9NYR8 311 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 OR1A1Q9P1Q5 309 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 ADAM30Q9UKF2 790 aa11.46□□□□□ -0.57
NUP54-216ENST00000514901 TSPAN9O75954 239 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms