RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 NUP205Q92621 2012 aa1.74□□□□□ -2.13
HMGB1P28-201ENST00000507778 FTCDNL1E5RQL4 147 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 GOLGA8RI6L899 631 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 CALUO43852 315 aaPredicted RBP1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 HBZP02008 142 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 OR13C7P0DN81 318 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 CPMP14384 443 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 CDK2P24941 298 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 PSMB6P28072 239 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 GRPRP30550 384 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 CRATP43155 626 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 OR1E2P47887 323 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 TMEM176BQ3YBM2 270 aaPredicted RBP1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 DNAL1Q4LDG9 190 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 OR5L1Q8NGL2 311 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 OR4C16Q8NGL9 310 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 ERMNQ8TAM6 284 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 UPK3BQ9BT76 320 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 C1QTNF6Q9BXI9 259 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 SMDT1Q9H4I9 107 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 ALG5Q9Y673 324 aa1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 COL5A1P20908 1838 aaPredicted RBP1.73□□□□□ -2.13
HMGB1P28-201ENST00000507778 PIK3R4Q99570 1358 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 VWA8A3KMH1 1905 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 CCRL2O00421 344 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 OCMP0CE72 109 aaPredicted RBP1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 IGHV3-30-3P0DP02 117 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 ATP6V0CP27449 155 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 LPAR6P43657 344 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 DAD1P61803 113 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 ZNF117Q03924 483 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 FOXF1Q12946 379 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 FAM229BQ4G0N7 80 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 SPATA31B1PQ5VZV4 182 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 Q6ZRU5 148 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 CCDC121Q6ZUS5 278 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 ZNF767PQ75MW2 155 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 OR10A6Q8NH74 314 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 ACY3Q96HD9 319 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 ABHD14BQ96IU4 210 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 DCUN1D5Q9BTE7 237 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 EIF5A2Q9GZV4 153 aaKnown RBP1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 WDR54Q9H977 334 aa1.72□□□□□ -2.13
HMGB1P28-201ENST00000507778 TRGV4A0A0C4DH28 118 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 GOLGA6L10A6NI86 522 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 METTL15A6NJ78 407 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 C17orf51A8MQB3 221 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 COPEO14579 308 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 STK16O75716 305 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 CRYBA1P05813 215 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 CD99P14209 185 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 SLC25A16P16260 332 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 BLVRBP30043 206 aaPredicted RBP1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 OPRM1P35372 400 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 H2BFSP57053 126 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 RWDD2BP57060 319 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 SMAGPQ0VAQ4 97 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 TBC1D28Q2M2D7 210 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 HLA-DRB5Q30154 266 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 SDHAF4Q5VUM1 108 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 PDPK2PQ6A1A2 396 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 FUNDC1Q8IVP5 155 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 CCDC112Q8NEF3 446 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 OR11H1Q8NG94 326 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 TLCD1Q96CP7 247 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 ZNF514Q96K75 400 aaPredicted RBP1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 OR7D2Q96RA2 312 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 MGLLQ99685 303 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 C7orf50Q9BRJ6 194 aaKnown RBP1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 MND1Q9BWT6 205 aa1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 PUS1Q9Y606 427 aaKnown RBP eCLIP1.71□□□□□ -2.14
HMGB1P28-201ENST00000507778 PLXNB1O43157 2135 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 A0A0J9YX75 114 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 DHRS12A0PJE2 317 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 ODF3BA8MYP8 253 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 ZW10O43264 779 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 TRAPPC3O43617 180 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 STX10O60499 249 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 ADAP1O75689 374 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 LY6HO94772 140 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 SOD1P00441 154 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 IGLV3-27P01718 113 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 LINC00614P0C842 121 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 ESDP10768 282 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 ZNF7P17097 686 aaPredicted RBP1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 HSPA9P38646 679 aaKnown RBP1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 LINC00313P59037 77 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 UBE2G2P60604 165 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 FGF12P61328 243 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 SKP1P63208 163 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 DMTNQ08495 405 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 NPATQ14207 1427 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 C4orf26Q17RF5 130 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 LRRC26Q2I0M4 334 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 MESTQ5EB52 335 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 RASL11AQ6T310 242 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 PLEKHG7Q6ZR37 379 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 PLCZ1Q86YW0 608 aa1.7□□□□□ -2.14
HMGB1P28-201ENST00000507778 CYGBQ8WWM9 190 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms