RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ZNF860A6NHJ4 632 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 ZNF879B4DU55 563 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 LIN7AO14910 233 aaPredicted RBP1.15□□□□□ -2.23
VPS50-219ENST00000495039 LY6HO94772 140 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 PRB1P04280 392 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 SLC35E2BP0CK96 405 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 CD200P41217 278 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 PSMB3P49720 205 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 ETV1P50549 477 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 SYCP1Q15431 976 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 KRTAP21-3Q3LHN1 58 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 OR4X1Q8NH49 305 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 C16orf78Q8WTQ4 265 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 C19orf60Q96EN9 201 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 METTL17Q9H7H0 456 aaPredicted RBP1.15□□□□□ -2.23
VPS50-219ENST00000495039 MRPS16Q9Y3D3 137 aaKnown RBP1.15□□□□□ -2.23
VPS50-219ENST00000495039 MPDZO75970 2070 aa1.15□□□□□ -2.23
VPS50-219ENST00000495039 PRRC2BQ5JSZ5 2229 aaKnown RBP1.15□□□□□ -2.23
VPS50-219ENST00000495039 ATG2BQ96BY7 2078 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 DHRS12A0PJE2 317 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 UBFD1O14562 309 aaKnown RBP1.14□□□□□ -2.23
VPS50-219ENST00000495039 ESDP10768 282 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 ATP6V0CP27449 155 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 ACTBP60709 375 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 RAB8AP61006 207 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 ACTG1P63261 375 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 FAM3AP98173 230 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 USF2Q15853 346 aaPredicted RBP1.14□□□□□ -2.23
VPS50-219ENST00000495039 ZBTB6Q15916 424 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 RASL11AQ6T310 242 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 TMEM75Q8N9X5 138 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 MRPS24Q96EL2 167 aaKnown RBP1.14□□□□□ -2.23
VPS50-219ENST00000495039 TMEM56Q96MV1 263 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 C1QTNF6Q9BXI9 259 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 CDCA4Q9BXL8 241 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 LINC00527Q9UJ94 153 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 SNX12Q9UMY4 172 aa1.14□□□□□ -2.23
VPS50-219ENST00000495039 CHD2O14647 1828 aaKnown RBP1.14□□□□□ -2.23
VPS50-219ENST00000495039 SIGLEC16A6NMB1 481 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 C9J4A7 227 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 GP1BAP07359 652 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 ALOX5APP20292 161 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 HINT1P49773 126 aaPredicted RBP1.13□□□□□ -2.23
VPS50-219ENST00000495039 PSMD7P51665 324 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 EXOC3L4Q17RC7 722 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 RBM48Q5RL73 367 aaKnown RBP1.13□□□□□ -2.23
VPS50-219ENST00000495039 LGALS9CQ6DKI2 356 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 COPS6Q7L5N1 327 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 SLC13A5Q86YT5 568 aaPredicted RBP1.13□□□□□ -2.23
VPS50-219ENST00000495039 NATD1Q8N6N6 113 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 DYNC2LI1Q8TCX1 351 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 FAM210AQ96ND0 272 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 GPR22Q99680 433 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 Q9BRP9 147 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 C16orf95Q9H693 158 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 NDUFB11Q9NX14 153 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 CHMP5Q9NZZ3 219 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 MAP3K19Q56UN5 1328 aa1.13□□□□□ -2.23
VPS50-219ENST00000495039 SLX4Q8IY92 1834 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 KDM5BQ9UGL1 1544 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 A0A0G2JQZ4 141 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 GRIFINA4D1Z8 144 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 F5H5K5 113 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 STK16O75716 305 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 PVALBP20472 110 aaPredicted RBP1.12□□□□□ -2.23
VPS50-219ENST00000495039 CRHBPP24387 322 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 CDK2P24941 298 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 ADORA1P30542 326 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 DLX6P56179 175 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 TSPEAR-AS2P59090 65 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 XRCC4Q13426 336 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 C1DQ13901 141 aaKnown RBP1.12□□□□□ -2.23
VPS50-219ENST00000495039 SCGB1D4Q6XE38 83 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 SPERTQ8NA61 448 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 CCDC112Q8NEF3 446 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 ATP6V1C2Q8NEY4 427 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 OR51H1Q8NH63 302 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 RNASEH2CQ8TDP1 164 aaKnown RBP1.12□□□□□ -2.23
VPS50-219ENST00000495039 TMIGD2Q96BF3 282 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 SMIM12Q96EX1 92 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 ABHD14BQ96IU4 210 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 TRNT1Q96Q11 434 aaKnown RBP1.12□□□□□ -2.23
VPS50-219ENST00000495039 PECRQ9BY49 303 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 MED28Q9H204 178 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 C11orf1Q9H5F2 150 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 ASCL3Q9NQ33 180 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 GLS2Q9UI32 602 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 SNX10Q9Y5X0 201 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 DOCK10Q96BY6 2186 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 COL4A1P02462 1669 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 ARHGAP32A7KAX9 2087 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 CLUHO75153 1309 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 PXDNLA1KZ92 1463 aa1.12□□□□□ -2.23
VPS50-219ENST00000495039 MUC16Q8WXI7 14507 aa1.11□□□□□ -2.23
VPS50-219ENST00000495039 IGLV3-9A0A075B6K5 115 aa1.11□□□□□ -2.23
VPS50-219ENST00000495039 H3BPC8 53 aa1.11□□□□□ -2.23
VPS50-219ENST00000495039 YKT6O15498 198 aa1.11□□□□□ -2.23
VPS50-219ENST00000495039 ZW10O43264 779 aa1.11□□□□□ -2.23
VPS50-219ENST00000495039 SYNGR1O43759 233 aa1.11□□□□□ -2.23
VPS50-219ENST00000495039 MPZL2O60487 215 aa1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms