RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 CX3CL1P78423 397 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 TMEM267Q0VDI3 215 aaPredicted RBP10.68□□□□□ -0.7
VARS-227ENST00000489979 RAB40BQ12829 278 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 MRPL28Q13084 256 aaKnown RBP10.68□□□□□ -0.7
VARS-227ENST00000489979 PYHIN1Q6K0P9 492 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 TRAT1Q6PIZ9 186 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 ZNF833PQ6ZTB9 187 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 C5orf24Q7Z6I8 188 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 OR52L2PQ8NGH6 319 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 SLC7A6OSQ96CW6 309 aaPredicted RBP10.68□□□□□ -0.7
VARS-227ENST00000489979 RHOVQ96L33 236 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 TMED9Q9BVK6 235 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 TUBA4BQ9H853 241 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 TAF9BQ9HBM6 251 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 SPACA1Q9HBV2 294 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 RETNQ9HD89 108 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 TMEM138Q9NPI0 162 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 FAM53CQ9NYF3 392 aa10.68□□□□□ -0.7
VARS-227ENST00000489979 RCC2Q9P258 522 aaKnown RBP10.68□□□□□ -0.7
VARS-227ENST00000489979 SNTNA6NMZ2 147 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 FCN1O00602 326 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 CD2P06729 351 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 FCGR1AP12314 374 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 BDKRB2P30411 391 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 PPP1CCP36873 323 aaKnown RBP10.67□□□□□ -0.7
VARS-227ENST00000489979 PPP3R1P63098 170 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 PLGLAQ15195 96 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 ACTBL2Q562R1 376 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 RAB12Q6IQ22 244 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 CD200R1LQ6Q8B3 271 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 PPP1R27Q86WC6 154 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 GAPTQ8N292 157 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 IL17DQ8TAD2 202 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 GPR148Q8TDV2 347 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 TMEM106AQ96A25 262 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 ORAI1Q96D31 301 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 FAM103A1Q9BTL3 118 aaKnown RBP10.67□□□□□ -0.7
VARS-227ENST00000489979 ERVK13-1Q9NX77 482 aa10.67□□□□□ -0.7
VARS-227ENST00000489979 SAA2-SAA4A0A096LPE2 208 aa10.66□□□□□ -0.7
VARS-227ENST00000489979 RRHO14718 337 aa10.66□□□□□ -0.7
VARS-227ENST00000489979 SAA2P0DJI9 122 aaPredicted RBP10.66□□□□□ -0.7
VARS-227ENST00000489979 UNQ5815/PRO19632Q6UWF5 114 aa10.66□□□□□ -0.7
VARS-227ENST00000489979 FAM131AQ6UXB0 335 aa10.66□□□□□ -0.7
VARS-227ENST00000489979 MRPS24Q96EL2 167 aaKnown RBP10.66□□□□□ -0.7
VARS-227ENST00000489979 CENPNQ96H22 339 aaPredicted RBP10.66□□□□□ -0.7
VARS-227ENST00000489979 CYYR1Q96J86 154 aa10.66□□□□□ -0.7
VARS-227ENST00000489979 FAM110AQ9BQ89 295 aa10.66□□□□□ -0.7
VARS-227ENST00000489979 CNOT2Q9NZN8 540 aaKnown RBP10.66□□□□□ -0.7
VARS-227ENST00000489979 JPT1Q9UK76 154 aa10.66□□□□□ -0.7
VARS-227ENST00000489979 RNF150Q9ULK6 438 aa10.66□□□□□ -0.7
VARS-227ENST00000489979 GAB2Q9UQC2 676 aa10.66□□□□□ -0.7
VARS-227ENST00000489979 PEX16Q9Y5Y5 336 aa10.66□□□□□ -0.7
VARS-227ENST00000489979 H0Y980 276 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 RGS11O94810 467 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 FADS2O95864 444 aaKnown RBP10.65□□□□□ -0.7
VARS-227ENST00000489979 TRGV3P03979 118 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 ZP3P21754 424 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 CD40LGP29965 261 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 GPR176Q14439 515 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 ZIK1Q3SY52 487 aaPredicted RBP10.65□□□□□ -0.7
VARS-227ENST00000489979 AKIRIN2Q53H80 203 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 LFNGQ8NES3 379 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 RDH12Q96NR8 316 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 CLCC1Q96S66 551 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 ZNF184Q99676 751 aaPredicted RBP10.65□□□□□ -0.7
VARS-227ENST00000489979 THAP7Q9BT49 309 aaPredicted RBP10.65□□□□□ -0.7
VARS-227ENST00000489979 SLA2Q9H6Q3 261 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 RANGRFQ9HD47 186 aaPredicted RBP10.65□□□□□ -0.7
VARS-227ENST00000489979 AMBNQ9NP70 447 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 MBNL3Q9NUK0 354 aaKnown RBP10.65□□□□□ -0.7
VARS-227ENST00000489979 KCNIP1Q9NZI2 227 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 HERC2O95714 4834 aa10.65□□□□□ -0.7
VARS-227ENST00000489979 UBE2QL1A1L167 161 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 YPEL1O60688 119 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 CA11O75493 328 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 SC5DO75845 299 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 MAS1P04201 325 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 GABRB1P18505 474 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 HTD2P86397 168 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 RIPK1Q13546 671 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 XAF1Q6GPH4 301 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 IL34Q6ZMJ4 242 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 GTSCR1Q86UQ5 136 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 OR9G4Q8NGQ1 327 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 YPEL2Q96QA6 119 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 HIPK2Q9H2X6 1198 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 IFI27L2Q9H2X8 130 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 ORC6Q9Y5N6 252 aa10.64□□□□□ -0.71
VARS-227ENST00000489979 DNAH10Q8IVF4 4471 aa10.63□□□□□ -0.71
VARS-227ENST00000489979 ANKRD34BA5PLL1 514 aa10.63□□□□□ -0.71
VARS-227ENST00000489979 ALPLP05186 524 aa10.63□□□□□ -0.71
VARS-227ENST00000489979 GSTP1P09211 210 aaKnown RBP10.63□□□□□ -0.71
VARS-227ENST00000489979 SNRPBP14678 240 aaKnown RBP10.63□□□□□ -0.71
VARS-227ENST00000489979 IGFBP3P17936 291 aaPredicted RBP10.63□□□□□ -0.71
VARS-227ENST00000489979 KLF5Q13887 457 aaPredicted RBP10.63□□□□□ -0.71
VARS-227ENST00000489979 LY6G6FQ5SQ64 297 aa10.63□□□□□ -0.71
VARS-227ENST00000489979 RPL22L1Q6P5R6 122 aaKnown RBP10.63□□□□□ -0.71
VARS-227ENST00000489979 GLIPR1L1Q6UWM5 242 aa10.63□□□□□ -0.71
VARS-227ENST00000489979 GLDNQ6ZMI3 551 aaPredicted RBP10.63□□□□□ -0.71
VARS-227ENST00000489979 ZNF554Q86TJ5 538 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms