RNA–Protein interactions for RNA: ENST00000488072.1

SHROOM1-205, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 423 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-205ENST00000488072 JMJD8Q96S16 334 aa13.78□□□□□ -0.2
SHROOM1-205ENST00000488072 C11orf54Q9H0W9 315 aaPredicted RBP13.78□□□□□ -0.2
SHROOM1-205ENST00000488072 JPT1Q9UK76 154 aa13.78□□□□□ -0.2
SHROOM1-205ENST00000488072 SH2D7A6NKC9 451 aaPredicted RBP13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 FAM25AB3EWG3 89 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 FAM25CB3EWG5 89 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 FAM25GB3EWG6 89 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 TIMM23O14925 209 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 YPEL1O60688 119 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 PNLIPRP3Q17RR3 467 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 TMEM69Q5SWH9 247 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 ZNF554Q86TJ5 538 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 SNX29P2Q8IUI4 249 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 FAM216AQ8WUB2 273 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 TOMM40LQ969M1 308 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 RPEQ96AT9 228 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 YPEL2Q96QA6 119 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 OCSTAMPQ9BR26 566 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 ABHD14AQ9BUJ0 271 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 SLIRPQ9GZT3 109 aaKnown RBP13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 IFI27L2Q9H2X8 130 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 VPREB3Q9UKI3 123 aa13.77□□□□□ -0.21
SHROOM1-205ENST00000488072 A6NDX4 124 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 HSD17B6O14756 317 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 NOL3O60936 208 aaKnown RBP13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 TMEM127O75204 238 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 APOA1P02647 267 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 RPL39P5Q59GN2 51 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 TMEM86BQ8N661 226 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 OR56B4Q8NH76 319 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 ACOT12Q8WYK0 555 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 CFHR4Q92496 578 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 SNAPC3Q92966 411 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 C5orf30Q96GV9 206 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 BCL7BQ9BQE9 202 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 CABLES2Q9BTV7 478 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 DPAGT1Q9H3H5 408 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 RDH8Q9NYR8 311 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 C1RLQ9NZP8 487 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 CCDC59Q9P031 241 aaKnown RBP13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 RSL24D1Q9UHA3 163 aaKnown RBP13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 SIGLEC9Q9Y336 463 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 POMT1Q9Y6A1 747 aa13.76□□□□□ -0.21
SHROOM1-205ENST00000488072 VGLL3A8MV65 326 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 PROP1O75360 226 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 SCGNO76038 276 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 DTYMKP23919 212 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 HNF4GQ14541 408 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 KRTAP21-3Q3LHN1 58 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 Q6ZS46 218 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 MOB3BQ86TA1 216 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 OR4A4PQ8NGN8 299 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 CAPSLQ8WWF8 208 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 TMEM158Q8WZ71 300 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 MRPL20Q9BYC9 149 aaKnown RBP13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 ABCB10Q9NRK6 738 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 EXTL2Q9UBQ6 330 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 TCF19Q9Y242 345 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 COL6A5A8TX70 2615 aa13.75□□□□□ -0.21
SHROOM1-205ENST00000488072 SAA2-SAA4A0A096LPE2 208 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 TRBV6-7A0A0A0MS04 114 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 A0A0A6YYH2 397 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 IGHV1-3A0A0C4DH29 117 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 A6NJ64 397 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 HSPA12AO43301 675 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 SNRNP70P08621 437 aaKnown RBP13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 SAA2P0DJI9 122 aaPredicted RBP13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 NFYAP23511 347 aaPredicted RBP13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 MNDAP41218 407 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 ACTG1P63261 375 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 HIST2H2BDQ6DRA6 164 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 MZT2AQ6P582 158 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 CNIH2Q6PI25 160 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 GLDNQ6ZMI3 551 aaPredicted RBP13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 C8orf31Q8N9H6 132 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 OR2AK2Q8NG84 335 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 RTN4IP1Q8WWV3 396 aaPredicted RBP13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 ABHD1Q96SE0 405 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 ZNF251Q9BRH9 671 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 AGMATQ9BSE5 352 aa13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 AMMECR1Q9Y4X0 333 aaPredicted RBP13.74□□□□□ -0.21
SHROOM1-205ENST00000488072 RGS5O15539 181 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 MDKP21741 143 aaPredicted RBP13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 ZBTB25P24278 435 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 SOX6P35712 828 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 ARL6IP1Q15041 203 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 TMEM30BQ3MIR4 351 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 STEAP3Q658P3 488 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 Q6ZS49 121 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 Q6ZSV7 163 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 HOGA1Q86XE5 327 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 BEST4Q8NFU0 473 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 OR5R1Q8NH85 324 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 AP3S1Q92572 193 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 RITA1Q96K30 269 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 C6orf62Q9GZU0 229 aaPredicted RBP13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 RAB9BQ9NP90 201 aa13.73□□□□□ -0.21
SHROOM1-205ENST00000488072 BTBD17A6NE02 478 aa13.72□□□□□ -0.21
SHROOM1-205ENST00000488072 GAPDHP04406 335 aaKnown RBP13.72□□□□□ -0.21
SHROOM1-205ENST00000488072 OR8U9P0C7N5 309 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms