RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 NQO1P15559 274 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 NQO2P16083 231 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 GZMHP20718 246 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 ELK4P28324 431 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 HSD11B1P28845 292 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CASP1P29466 404 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CRABP1P29762 137 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CDKN2CP42773 168 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CRATP43155 626 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 OR2B6P58173 313 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 NAA20P61599 178 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 AP1S1P61966 158 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 MGAT3Q09327 533 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 DHRS2Q13268 280 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 TOMM34Q15785 309 aaPredicted RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 TAL2Q16559 108 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 DEFB115Q30KQ5 88 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 HNRNPA1L2Q32P51 320 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 ZNF404Q494X3 552 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 Q5BKY6 102 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 COQ5Q5HYK3 327 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 SYT6Q5T7P8 510 aaPredicted RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 TTC33Q6PID6 262 aaPredicted RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 TMPPEQ6ZT21 453 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CYP4Z1Q86W10 505 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 LYPD6Q86Y78 171 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 SLC13A5Q86YT5 568 aaPredicted RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 CPNE9Q8IYJ1 553 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 ATPAF2Q8N5M1 289 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 TMEM156Q8N614 296 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 OR4A15Q8NGL6 344 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 TMBIM1Q969X1 311 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CMTM5Q96DZ9 223 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 C14orf144Q96I85 54 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 TMEM56Q96MV1 263 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 RILPQ96NA2 401 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 PRAP1Q96NZ9 151 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 OLFM3Q96PB7 478 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 PPP1R2P1Q96PQ5 205 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 TRNT1Q96Q11 434 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 OR2M4Q96R27 311 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 C12orf57Q99622 126 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 PRRT1Q99946 306 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 SELENOSQ9BQE4 189 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 UTP23Q9BRU9 249 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 C2orf88Q9BSF0 95 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 ULBP1Q9BZM6 244 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 C6orf62Q9GZU0 229 aaPredicted RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 FAM107BQ9H098 131 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 GABARAPL1Q9H0R8 117 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 OR51V1Q9H2C8 321 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 TXNIPQ9H3M7 391 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 C19orf12Q9NSK7 152 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CMTM6Q9NX76 183 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 ANXA10Q9UJ72 324 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 FLVCR2Q9UPI3 526 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 RBMX2Q9Y388 322 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 PRELID3BQ9Y3B1 194 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 NUBP2Q9Y5Y2 271 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 TMEM56-RWDD3S4R434 201 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 ABCC3O15438 1527 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 NUP155O75694 1391 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CLTCL1P53675 1640 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 KTN1Q86UP2 1357 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 KMT2EQ8IZD2 1858 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 ANKRD36BQ8N2N9 1353 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 PLXNA4Q9HCM2 1894 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 MED23Q9ULK4 1368 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 BIVM-ERCC5R4GMW8 1640 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 PTPRDP23468 1912 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 CUL7Q14999 1698 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 ZNF609O15014 1411 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 FAM135BQ49AJ0 1406 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 SETD5Q9C0A6 1442 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 YTHDC2Q9H6S0 1430 aaKnown RBP0.81□□□□□ -2.28
SMC4-220ENST00000488017 ANKRD50Q9ULJ7 1429 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 COL5A3P25940 1745 aaPredicted RBP0.81□□□□□ -2.28
SMC4-220ENST00000488017 COL24A1Q17RW2 1714 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 SHANK3Q9BYB0 1731 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 MARF1Q9Y4F3 1742 aaKnown RBP0.81□□□□□ -2.28
SMC4-220ENST00000488017 GRIN2AQ12879 1464 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 IQSEC2Q5JU85 1478 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 SNAPC4Q5SXM2 1469 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 ABCC10Q5T3U5 1492 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 MAGI2Q86UL8 1455 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 ARAP1Q96P48 1450 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 SHANK2Q9UPX8 1470 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 FANCMQ8IYD8 2048 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 SIPA1L3O60292 1781 aaPredicted RBP0.81□□□□□ -2.28
SMC4-220ENST00000488017 LAMB1P07942 1786 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 LAMB2P55268 1798 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 EPRSP07814 1512 aaKnown RBP0.81□□□□□ -2.28
SMC4-220ENST00000488017 LRRC7Q96NW7 1537 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 KDM5DQ9BY66 1539 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 ARHGEF12Q9NZN5 1544 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 COL11A1P12107 1806 aaPredicted RBP0.81□□□□□ -2.28
SMC4-220ENST00000488017 IGKV1D-37A0A075B6S9 117 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 IGHV3-21A0A0B4J1V1 117 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 IGHV3-43A0A0B4J1X8 118 aa0.81□□□□□ -2.28
SMC4-220ENST00000488017 A0A0J9YYE9 177 aa0.81□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms