RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 GCNT2Q8N0V5 402 aa15.16■□□□□ 0.02
VIM-206ENST00000487938 PRRC2CQ9Y520 2896 aaKnown RBP15.16■□□□□ 0.02
VIM-206ENST00000487938 ZFP92A6NM28 416 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 NPIPB11E5RHQ5 1161 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 LYZL6O75951 148 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 CTAG1AP78358 180 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 HNF4GQ14541 408 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 SPANXN5Q5MJ07 72 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 CXorf67Q86X51 503 aaPredicted RBP15.15■□□□□ 0.02
VIM-206ENST00000487938 DRAM1Q8N682 238 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 SLC25A40Q8TBP6 338 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 TVP23CQ96ET8 276 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 FER1L6-AS2Q96M78 137 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 SH2D1BO14796 132 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 IFNA17P01571 189 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 S100A8P05109 93 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 MAS1LP35410 378 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 PLA2G5P39877 138 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 ARG2P78540 354 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 NCMAPQ5T1S8 102 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 DPPA3Q6W0C5 159 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 SSX7Q7RTT5 188 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 ZNF525Q8N782 197 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 NIPSNAP3BQ9BS92 247 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 CDH20Q9HBT6 801 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 POLDIP2Q9Y2S7 368 aa15.15■□□□□ 0.02
VIM-206ENST00000487938 AP4M1O00189 453 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 CXCL1P09341 107 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 ZNF726P1Q15940 193 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 KHDC3LQ587J8 217 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 ZNF766Q5HY98 468 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 FGFRL1Q8N441 504 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 ZNF665Q9H7R5 613 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 TREM2Q9NZC2 230 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 GTF3C1Q12789 2109 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 LOC102723971A0A1B0GUV8 181 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 TFF1P04155 84 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 PGA5P0DJD9 388 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 IGHV1-2P23083 117 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 UBE2NP61088 152 aaKnown RBP15.14■□□□□ 0.01
VIM-206ENST00000487938 OR2B11Q5JQS5 317 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 MOB1BQ7L9L4 216 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 Q8WTZ3 238 aa15.14■□□□□ 0.01
VIM-206ENST00000487938 SEBOXQ9HB31 216 aaPredicted RBP15.14■□□□□ 0.01
VIM-206ENST00000487938 LIN7CQ9NUP9 197 aaKnown RBP15.14■□□□□ 0.01
VIM-206ENST00000487938 PSPNO60542 156 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 B2MP61769 119 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 RAB11AP62491 216 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 PSG7Q13046 419 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 MRPL49Q13405 166 aaKnown RBP15.13■□□□□ 0.01
VIM-206ENST00000487938 ELOBQ15370 118 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 ZNF826PQ6ZT77 177 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 Q8IYB0 196 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 LILRB2Q8N423 598 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 OR1L1Q8NH94 360 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 NIT2Q9NQR4 276 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 TINAGQ9UJW2 476 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 WNT9BO14905 357 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 WNT2P09544 360 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 ERVFRD-1P60508 538 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 ZNF146Q15072 292 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 HES3Q5TGS1 186 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 ZNF787Q6DD87 383 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 TMEM9BQ9NQ34 198 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 MBNL3Q9NUK0 354 aaKnown RBP15.13■□□□□ 0.01
VIM-206ENST00000487938 WIPI2Q9Y4P8 454 aa15.13■□□□□ 0.01
VIM-206ENST00000487938 LOC400499M0QZD8 3231 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 TGIF2-C20orf24A0A0A6YYL0 155 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 PIGBOS1A0A0B4J2F0 54 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 RAMP3O60896 148 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 CLN5O75503 358 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 WISP2O76076 250 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 SMIM6P0DI80 62 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 MPV17P39210 176 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 OR4C12Q96R67 309 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 TRAV1-1A0A0B4J248 108 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 HAND1O96004 215 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 CD200P41217 278 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 OR3A1P47881 315 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 ELLP55199 621 aaPredicted RBP15.12■□□□□ 0.01
VIM-206ENST00000487938 S100A12P80511 92 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 KIAA0141Q14154 515 aaPredicted RBP15.12■□□□□ 0.01
VIM-206ENST00000487938 ZNF674Q2M3X9 581 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 LRRC75BQ2VPJ9 315 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 OR8G2PQ6IF36 304 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 C1QL4Q86Z23 238 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 ZNF808Q8N4W9 903 aaPredicted RBP15.12■□□□□ 0.01
VIM-206ENST00000487938 OR52L2PQ8NGH6 319 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 TCTEX1D2Q8WW35 142 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 HIPK2Q9H2X6 1198 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 OBP2BQ9NPH6 170 aa15.12■□□□□ 0.01
VIM-206ENST00000487938 A0A087WWC5 75 aa15.11■□□□□ 0.01
VIM-206ENST00000487938 YIF1AO95070 293 aa15.11■□□□□ 0.01
VIM-206ENST00000487938 AGFG2O95081 481 aa15.11■□□□□ 0.01
VIM-206ENST00000487938 KRASP01116 189 aa15.11■□□□□ 0.01
VIM-206ENST00000487938 AESQ08117 197 aa15.11■□□□□ 0.01
VIM-206ENST00000487938 G6PCP35575 357 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 RPL30P62888 115 aaKnown RBP15.1■□□□□ 0.01
VIM-206ENST00000487938 HBG1P69891 147 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 HBG2P69892 147 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms