RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 LPCAT4Q643R3 524 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 PPP1R2P3Q6NXS1 205 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 CRLF3Q8IUI8 442 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 C3orf22Q8N5N4 141 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 NATD1Q8N6N6 113 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 PYDC1Q8WXC3 89 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 FAM131CQ96AQ9 280 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 QKIQ96PU8 341 aaKnown RBP eCLIP2.18□□□□□ -2.06
USP48-209ENST00000487880 CYTH2Q99418 400 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 KIFC1Q9BW19 673 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 SRRQ9GZT4 340 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 CXorf21Q9HAI6 301 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 GLS2Q9UI32 602 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 ENPP5Q9UJA9 477 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 STOML2Q9UJZ1 356 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 MMACHCQ9Y4U1 282 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 TRAPPC1Q9Y5R8 145 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 ICOSQ9Y6W8 199 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 PSME4Q14997 1843 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 ECM29Q5VYK3 1845 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 PLXNB3Q9ULL4 1909 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 KIDINS220Q9ULH0 1771 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 MYH11P35749 1972 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 CLUHO75153 1309 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 DCCP43146 1447 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 PEAK1Q9H792 1746 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 KIF13AQ9H1H9 1805 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 TRAV8-7A0A075B6U6 113 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 IGHV3-21A0A0B4J1V1 117 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 LOC389332A0A1B0GUA5 103 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 LINC00854A0A1B0GVQ3 168 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 GSTTP1A0A1W2PQM5 241 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 EFCAB10A6NFE3 127 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 TRPC5OSA6NMA1 111 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 OR2AT4A6NND4 320 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 SEC14L6B5MCN3 397 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 E7EQL1 145 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 TCAPO15273 167 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 UGT2B11O75310 529 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 SNAPC5O75971 98 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 LYPLA2O95372 231 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 ASS1P00966 412 aaKnown RBP2.17□□□□□ -2.06
USP48-209ENST00000487880 IGKV5-2P06315 115 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 HOXB8P17481 243 aaPredicted RBP2.17□□□□□ -2.06
USP48-209ENST00000487880 ERP29P30040 261 aaKnown RBP2.17□□□□□ -2.06
USP48-209ENST00000487880 UGT2B10P36537 528 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 MAP3K7CLP57077 242 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 GABARAPL2P60520 117 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 BNIP2Q12982 314 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 GNA13Q14344 377 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 PDK2Q15119 407 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 TMED2Q15363 201 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 NDUFAF6Q330K2 333 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 CLEC12AQ5QGZ9 265 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 RBM48Q5RL73 367 aaKnown RBP2.17□□□□□ -2.06
USP48-209ENST00000487880 PLCZ1Q86YW0 608 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 AMN1Q8IY45 258 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 BLIDQ8IZY5 108 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 ZNF321PQ8N8H1 164 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 OR4A15Q8NGL6 344 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 OR2K2Q8NGT1 345 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 PDCD6IPQ8WUM4 868 aaKnown RBP2.17□□□□□ -2.06
USP48-209ENST00000487880 CNBD2Q96M20 576 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 ZNF75AQ96N20 296 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 OR2M4Q96R27 311 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 C6orf62Q9GZU0 229 aaPredicted RBP2.17□□□□□ -2.06
USP48-209ENST00000487880 SLC38A1Q9H2H9 487 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 NLE1Q9NVX2 485 aaPredicted RBP2.17□□□□□ -2.06
USP48-209ENST00000487880 EMC3Q9P0I2 261 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 FLVCR2Q9UPI3 526 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 RNF11Q9Y3C5 154 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 ZNF780BQ9Y6R6 833 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 ADAMTSL3P82987 1691 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 KIF1AQ12756 1690 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 MYH4Q9Y623 1939 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 CHD1O14646 1710 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 TJP1Q07157 1748 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 MARF1Q9Y4F3 1742 aaKnown RBP2.17□□□□□ -2.06
USP48-209ENST00000487880 RIC1Q4ADV7 1423 aa2.17□□□□□ -2.06
USP48-209ENST00000487880 LAMB1P07942 1786 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 RIMS1Q86UR5 1692 aaKnown RBP2.16□□□□□ -2.06
USP48-209ENST00000487880 TOPAZ1Q8N9V7 1692 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 ADAMTS7Q9UKP4 1686 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 COL1A1P02452 1464 aaPredicted RBP2.16□□□□□ -2.06
USP48-209ENST00000487880 PLIN4Q96Q06 1357 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 C1orf232A0A0U1RR37 186 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 PNMA8CA0A1B0GUJ8 204 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 TCRBV3S1A0A5B6 114 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 LINC00862A6NCI5 91 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 ZNF729A6NN14 1252 aaPredicted RBP2.16□□□□□ -2.06
USP48-209ENST00000487880 GGTLC3B5MD39 225 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 hCG_2039718K7EN88 272 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 PSMD11O00231 422 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 TOR1AO14656 332 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 SYNGR2O43760 224 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 SPOPO43791 374 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 CALUO43852 315 aaPredicted RBP2.16□□□□□ -2.06
USP48-209ENST00000487880 DEDDO75618 318 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 MBP02144 154 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 APOA1P02647 267 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms