RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 DLX6P56179 175 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 SCAND1P57086 179 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 HLA-DRB3P79483 266 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 PAX5Q02548 391 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 UNC119Q13432 240 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 HNF4GQ14541 408 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 C17orf58Q2M2W7 97 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 AWAT1Q58HT5 328 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 KHDC1LQ5JSQ8 128 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 OLFML2AQ68BL7 652 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 CRIP3Q6Q6R5 217 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 TCF23Q7RTU1 214 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 C16orf82Q7Z2V1 217 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 OR1L1Q8NH94 360 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 MRPL30Q8TCC3 161 aaKnown RBP6.51□□□□□ -1.37
USP40-216ENST00000485943 LGALS14Q8TCE9 139 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 PTX4Q96A99 478 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 MISP3Q96FF7 219 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 ABHD14AQ9BUJ0 271 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 ST6GALNAC5Q9BVH7 336 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 RHBDL2Q9NX52 303 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 C1RLQ9NZP8 487 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 PIPOXQ9P0Z9 390 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 KIAA1456Q9P272 454 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 AK3Q9UIJ7 227 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 HSF4Q9ULV5 492 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 TCF19Q9Y242 345 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 A0A0B4J203 849 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 TMEM89A2RUT3 159 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 CLPSL1A2RUU4 121 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 ODF3BA8MYP8 253 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 RAB29O14966 203 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 RGS5O15539 181 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 VSIG10L2P0DP72 767 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 MDKP21741 143 aaPredicted RBP6.5□□□□□ -1.37
USP40-216ENST00000485943 PAX6P26367 422 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 CD34P28906 385 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 PPP1CCP36873 323 aaKnown RBP6.5□□□□□ -1.37
USP40-216ENST00000485943 VDAC2P45880 294 aaPredicted RBP6.5□□□□□ -1.37
USP40-216ENST00000485943 GPR12P47775 334 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 REG1BP48304 166 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 VBP1P61758 197 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 Q3ZCU0 254 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 CDNFQ49AH0 187 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 TMEM69Q5SWH9 247 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 GPR107Q5VW38 600 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 C11orf88Q6PI97 169 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 OR52L2PQ8NGH6 319 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 OR4P4Q8NGL7 312 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 OR2T10Q8NGZ9 312 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 OR56B4Q8NH76 319 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 C17orf50Q8WW18 174 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 SLC25A33Q9BSK2 321 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 FUNDC2Q9BWH2 189 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 ZNF581Q9P0T4 197 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 COMMD3Q9UBI1 195 aa6.5□□□□□ -1.37
USP40-216ENST00000485943 MRPS7Q9Y2R9 242 aaKnown RBP6.5□□□□□ -1.37
USP40-216ENST00000485943 TRAV18A0A075B6X5 111 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 A0A087X0M5 115 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 A0A1B0GX30 115 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 TRDCB7Z8K6 153 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 NPIPB11E5RHQ5 1161 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 TIMM23O14925 209 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 FABP7O15540 132 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 YPEL1O60688 119 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 DIRAS3O95661 229 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 IGKV1D-33P01593 117 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 IGKV1-33P01594 117 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 APOA2P02652 100 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 SNRNP70P08621 437 aaKnown RBP6.49□□□□□ -1.37
USP40-216ENST00000485943 CTXN2P0C2S0 81 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 JUNBP17275 347 aaPredicted RBP6.49□□□□□ -1.37
USP40-216ENST00000485943 CD24P25063 80 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 S100GP29377 79 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 GDNFP39905 211 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 CBX5P45973 191 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 OR3A3P47888 321 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 HTD2P86397 168 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 MORN2Q502X0 79 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 UBE2NLQ5JXB2 153 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 SIGIRRQ6IA17 410 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 HCP5Q6MZN7 132 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 BAIAP2L2Q6UXY1 529 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 CENPVQ7Z7K6 275 aaPredicted RBP6.49□□□□□ -1.37
USP40-216ENST00000485943 CLVS1Q8IUQ0 354 aaPredicted RBP6.49□□□□□ -1.37
USP40-216ENST00000485943 IZUMO1Q8IYV9 350 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 Q8N1Y9 231 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 C11orf42Q8N5U0 333 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 DRAM1Q8N682 238 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 SAMD12Q8N8I0 201 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 OR4A4PQ8NGN8 299 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 ABHD5Q8WTS1 349 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 ACOT12Q8WYK0 555 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 C1orf147Q96MC9 270 aaPredicted RBP6.49□□□□□ -1.37
USP40-216ENST00000485943 YPEL2Q96QA6 119 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 RASL11BQ9BPW5 248 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 ZNF251Q9BRH9 671 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 GHITMQ9H3K2 345 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 PRDM13Q9H4Q3 707 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 RNF167Q9H6Y7 350 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms