RNA–Protein interactions for RNA: ENST00000485424.1

UBA3-210, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 2

Gene UBA3, Length 652 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-210	ENST00000485424	GABPB1	Q06547	395 aa	Predicted RBP	10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	KIR2DS1	Q14954	304 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	RCN1	Q15293	331 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	RBM48	Q5RL73	367 aa	Known RBP	10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	ZNF554	Q86TJ5	538 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	FAM71E2	Q8N5Q1	922 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	OR2AK2	Q8NG84	335 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	OR52L2P	Q8NGH6	319 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	SETD6	Q8TBK2	473 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	KCTD7	Q96MP8	289 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	CHCHD6	Q9BRQ6	235 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	PLSCR3	Q9NRY6	295 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	STEAP1	Q9UHE8	339 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	PSORS1C1	Q9UIG5	152 aa		10.39	□□□□□ -0.75
UBA3-210	ENST00000485424	SEC14L6	B5MCN3	397 aa		10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	PPP1CC	P36873	323 aa	Known RBP	10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	ACTB	P60709	375 aa		10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	HTD2	P86397	168 aa		10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	GNMT	Q14749	295 aa		10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	MS4A15	Q8N5U1	240 aa		10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	NANOGP1	Q8N7R0	232 aa		10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	ZNF485	Q8NCK3	441 aa		10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	C4orf3	Q8WVX3	66 aa		10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	IL1F10	Q8WWZ1	152 aa		10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	MND1	Q9BWT6	205 aa		10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	TMEM59	Q9BXS4	323 aa		10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	MBNL3	Q9NUK0	354 aa	Known RBP	10.38	□□□□□ -0.75
UBA3-210	ENST00000485424	DYNC2H1	Q8NCM8	4307 aa	Known RBP	10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	NBR2	O15453	112 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	YPEL1	O60688	119 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	IGHG4	P01861	327 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	IGF1	P05019	195 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	ECI1	P42126	302 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	LUM	P51884	338 aa	Predicted RBP	10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	PLGLA	Q15195	96 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	ACSM3	Q53FZ2	586 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	GAPT	Q8N292	157 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	OR11H1	Q8NG94	326 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	MRPL30	Q8TCC3	161 aa	Known RBP	10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	YPEL2	Q96QA6	119 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	TMED9	Q9BVK6	235 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	PARP11	Q9NR21	331 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	PLCXD1	Q9NUJ7	323 aa		10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	HUWE1	Q7Z6Z7	4374 aa	Known RBP	10.37	□□□□□ -0.75
UBA3-210	ENST00000485424	LY86	O95711	162 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	GNAO1	P09471	354 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	OR8U8	P0C7N1	319 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	MED22	Q15528	200 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	ZNF260	Q3ZCT1	412 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	SIGIRR	Q6IA17	410 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	RNF152	Q8N8N0	203 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	KCNG3	Q8TAE7	436 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	ABHD5	Q8WTS1	349 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	NABP2	Q9BQ15	211 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	FAAP24	Q9BTP7	215 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	MRPL20	Q9BYC9	149 aa	Known RBP	10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	PLEKHJ1	Q9NW61	149 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	SCN3B	Q9NY72	215 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	PIPOX	Q9P0Z9	390 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	WSB1	Q9Y6I7	421 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	LYST	Q99698	3801 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	RYR2	Q92736	4967 aa		10.36	□□□□□ -0.75
UBA3-210	ENST00000485424	TENM2	Q9NT68	2774 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	CSMD3	Q7Z407	3707 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	SAA2-SAA4	A0A096LPE2	208 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	PTGES3L	E9PB15	166 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	ATP6V0E1	O15342	81 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	HLA-DRB1	P01911	266 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	GSTP1	P09211	210 aa	Known RBP	10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	SAA2	P0DJI9	122 aa	Predicted RBP	10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	PSMB8	P28062	276 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	HTR2C	P28335	458 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	RPS27A	P62979	156 aa	Known RBP	10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	HMGN3	Q15651	99 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	HSD17B12	Q53GQ0	312 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	LIN54	Q6MZP7	749 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	C6orf201	Q7Z4U5	140 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	CEACAM19	Q7Z692	300 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	PHYHIP	Q92561	330 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	RBMXL1	Q96E39	390 aa	Known RBP	10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	UBE2E2	Q96LR5	201 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	PRR25	Q96S07	402 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	SULT4A1	Q9BR01	284 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	URM1	Q9BTM9	101 aa	Known RBP	10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	ANKRD60	Q9BZ19	345 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	OR51J1	Q9H342	316 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	ZNF580	Q9UK33	172 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	VSIG4	Q9Y279	399 aa		10.35	□□□□□ -0.75
UBA3-210	ENST00000485424	TRAV41	A0A0B4J266	112 aa		10.34	□□□□□ -0.75
UBA3-210	ENST00000485424		H7C2Y5	167 aa		10.34	□□□□□ -0.75
UBA3-210	ENST00000485424	RAB29	O14966	203 aa		10.34	□□□□□ -0.75
UBA3-210	ENST00000485424	HSPA12A	O43301	675 aa		10.34	□□□□□ -0.75
UBA3-210	ENST00000485424	CDK1	P06493	297 aa		10.34	□□□□□ -0.75
UBA3-210	ENST00000485424	NHLRC4	P0CG21	123 aa	Predicted RBP	10.34	□□□□□ -0.75
UBA3-210	ENST00000485424	SRM	P19623	302 aa		10.34	□□□□□ -0.75
UBA3-210	ENST00000485424	CNTFR	P26992	372 aa		10.34	□□□□□ -0.75
UBA3-210	ENST00000485424	CHAT	P28329	748 aa		10.34	□□□□□ -0.75
UBA3-210	ENST00000485424	BLVRB	P30043	206 aa	Predicted RBP	10.34	□□□□□ -0.75
UBA3-210	ENST00000485424	OR3A3	P47888	321 aa		10.34	□□□□□ -0.75
UBA3-210	ENST00000485424	CFHR3	Q02985	330 aa		10.34	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms