RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 NPFFR1Q9GZQ6 430 aa12.75□□□□□ -0.37
UPF3A-208ENST00000484246 A0A1W2PPE3 182 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 TRDCB7Z8K6 153 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 TIMM23O14925 209 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 GAPDHP04406 335 aaKnown RBP12.74□□□□□ -0.37
UPF3A-208ENST00000484246 KIR2DS4P43632 304 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 RAB13P51153 203 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 ZNF134P52741 427 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 MRPS15P82914 257 aaKnown RBP12.74□□□□□ -0.37
UPF3A-208ENST00000484246 KIR2DS1Q14954 304 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 HACD4Q5VWC8 232 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 FAM71F2Q6NXP2 309 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 IZUMO1Q8IYV9 350 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 OR52L2PQ8NGH6 319 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 OR4A4PQ8NGN8 299 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 OR4C13Q8NGP0 309 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 LINC01006Q8NI28 216 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 CABLES2Q9BTV7 478 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 TOLLIPQ9H0E2 274 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 ABCG5Q9H222 651 aa12.74□□□□□ -0.37
UPF3A-208ENST00000484246 NBEAL1Q6ZS30 2694 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 LANCL1O43813 399 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 OR2F2O95006 317 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 PPP1CCP36873 323 aaKnown RBP12.73□□□□□ -0.37
UPF3A-208ENST00000484246 SERPINB10P48595 397 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 PROK1P58294 105 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 PITPNAQ00169 270 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 EBI3Q14213 229 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 DIAPH2-AS1Q14236 149 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 PNLIPRP3Q17RR3 467 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 ZNF260Q3ZCT1 412 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 C11orf88Q6PI97 169 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 GPR141Q7Z602 305 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 C5orf24Q7Z6I8 188 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 ODF3L1Q8IXM7 274 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 C3orf56Q8N813 242 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 SETD6Q8TBK2 473 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 RTN4IP1Q8WWV3 396 aaPredicted RBP12.73□□□□□ -0.37
UPF3A-208ENST00000484246 WFDC12Q8WWY7 111 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 TAF15Q92804 592 aaKnown RBP eCLIP12.73□□□□□ -0.37
UPF3A-208ENST00000484246 AKR1E2Q96JD6 320 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 IFI27L2Q9H2X8 130 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 KIAA2026Q5HYC2 2103 aa12.73□□□□□ -0.37
UPF3A-208ENST00000484246 IGHV1-3A0A0C4DH29 117 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 IGKV1-6A0A0C4DH72 117 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 FABP7O15540 132 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 LPLP06858 475 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 SCTP09683 121 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 FAM106CPP0CH98 169 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 ZBTB25P24278 435 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 VBP1P61758 197 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 HERPUD1Q15011 391 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 CDNFQ49AH0 187 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 TMEM219Q86XT9 240 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 DRAM1Q8N682 238 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 OR2AK2Q8NG84 335 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 OR56B4Q8NH76 319 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 IL1F10Q8WWZ1 152 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 RBM14Q96PK6 669 aaKnown RBP12.72□□□□□ -0.37
UPF3A-208ENST00000484246 BCL7BQ9BQE9 202 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 NAA50Q9GZZ1 169 aaKnown RBP12.72□□□□□ -0.37
UPF3A-208ENST00000484246 DCSTAMPQ9H295 470 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 GHITMQ9H3K2 345 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 SLC23A1Q9UHI7 598 aa12.72□□□□□ -0.37
UPF3A-208ENST00000484246 M0QZK8 103 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 RPL5P46777 297 aaKnown RBP12.71□□□□□ -0.37
UPF3A-208ENST00000484246 ARFRP1Q13795 201 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 UBE2NLQ5JXB2 153 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 GPR107Q5VW38 600 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 SHISA2Q6UWI4 295 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 ZNF833PQ6ZTB9 187 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 TGIF2LXQ8IUE1 241 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 EDARADDQ8WWZ3 215 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 ACOT12Q8WYK0 555 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 CMTM3Q96MX0 182 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 AGMATQ9BSE5 352 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 ZNF702PQ9H963 129 aa12.71□□□□□ -0.37
UPF3A-208ENST00000484246 A0A075B6Q4 140 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 TMEM235A6NFC5 223 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 SNRNP70P08621 437 aaKnown RBP12.7□□□□□ -0.38
UPF3A-208ENST00000484246 CD1BP29016 333 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 TALDO1P37837 337 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 FBLN7Q53RD9 439 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 LYG1Q8N1E2 194 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 Q8N6K4 173 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 PHF21AQ96BD5 680 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 SLC25A33Q9BSK2 321 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 DIABLOQ9NR28 239 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 PIPOXQ9P0Z9 390 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 OR1A1Q9P1Q5 309 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 RNF114Q9Y508 228 aa12.7□□□□□ -0.38
UPF3A-208ENST00000484246 SAA2-SAA4A0A096LPE2 208 aa12.69□□□□□ -0.38
UPF3A-208ENST00000484246 TRBV6-7A0A0A0MS04 114 aa12.69□□□□□ -0.38
UPF3A-208ENST00000484246 XRCC3O43542 346 aa12.69□□□□□ -0.38
UPF3A-208ENST00000484246 SSX5O60225 188 aa12.69□□□□□ -0.38
UPF3A-208ENST00000484246 SAA2P0DJI9 122 aaPredicted RBP12.69□□□□□ -0.38
UPF3A-208ENST00000484246 CD24P25063 80 aa12.69□□□□□ -0.38
UPF3A-208ENST00000484246 REG1BP48304 166 aa12.69□□□□□ -0.38
UPF3A-208ENST00000484246 GNG2P59768 71 aa12.69□□□□□ -0.38
UPF3A-208ENST00000484246 OR2T6Q8NHC8 308 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms