RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SKP2Q13309 424 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 PPP1R3EQ9H7J1 279 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 TICRRQ7Z2Z1 1910 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 ARHGAP21Q5T5U3 1957 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 OR4C45A6NMZ5 311 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 RECKO95980 971 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 AGAP20933 346 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 RNF186Q9NXI6 227 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 FRRS1LQ9P0K9 344 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 CLDN16Q9Y5I7 305 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 PLA2G10O15496 165 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 SYNGR1O43759 233 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 ATP6V0CP27449 155 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 UBALD2Q8IYN6 164 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 OR13H1Q8NG92 308 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 CA5BP1Q8WTZ4 195 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 SAMD13Q5VXD3 122 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 HSF4Q9ULV5 492 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 PLCE1Q9P212 2302 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 DANCRP0C864 163 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 CKS2P33552 79 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 FOXF1Q12946 379 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 RBKSQ9H477 322 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 COL18A1P39060 1754 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 SLC25A17O43808 307 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 MPLP40238 635 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 LYZP61626 148 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 MRPL58Q14197 206 aaKnown RBP11.69□□□□□ -0.54
COL6A3-209ENST00000472056 Q6AWC8 147 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 ZNF296Q8WUU4 475 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-209ENST00000472056 PAXXQ9BUH6 204 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 SCNM1Q9BWG6 230 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 TNCP24821 2201 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 TRAV17A0A0B4J275 112 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 IFNL4K9M1U5 179 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 ZNF250P15622 560 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 RARRES2Q99969 163 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 PLXNB3Q9ULL4 1909 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 B4E171 279 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 GUCA2BQ16661 112 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 KLHDC9Q8NEP7 349 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 OR8B12Q8NGG6 310 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 QTRT1Q9BXR0 403 aaKnown RBP11.69□□□□□ -0.54
COL6A3-209ENST00000472056 RAXQ9Y2V3 346 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 PRR14LQ5THK1 2151 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 ZSWIM8A7E2V4 1837 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 HPRT1P00492 218 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 NKG7Q16617 165 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 MSRB3Q8IXL7 192 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 FADS6Q8N9I5 356 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 SPANXN1Q5VSR9 72 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 SPAG8Q99932 426 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-209ENST00000472056 MRPL32Q9BYC8 188 aaKnown RBP11.69□□□□□ -0.54
COL6A3-209ENST00000472056 PTP4A3O75365 173 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 CD8AP01732 235 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 SFTPA2Q8IWL1 248 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 SFTPA1Q8IWL2 248 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 TMEM222Q9H0R3 208 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 SLC26A1Q9H2B4 701 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 TNFRSF12AQ9NP84 129 aa11.69□□□□□ -0.54
COL6A3-209ENST00000472056 TM4SF4P48230 202 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 SPNS3Q6ZMD2 512 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 ZNF665Q9H7R5 613 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 MSL2Q9HCI7 577 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 JKAMPQ9P055 326 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 ZNF79Q15937 498 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 PPP1CCP36873 323 aaKnown RBP11.68□□□□□ -0.54
COL6A3-209ENST00000472056 LTBP4Q8N2S1 1624 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 MKRN2OSH3BPM6 223 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 UBE2L6O14933 153 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 RNF133Q8WVZ7 376 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 MRPL24Q96A35 216 aaKnown RBP11.68□□□□□ -0.54
COL6A3-209ENST00000472056 FLYWCH2Q96CP2 140 aaKnown RBP11.68□□□□□ -0.54
COL6A3-209ENST00000472056 A0A1W2PQM1 296 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 IGHV3-9P01782 118 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 ZNF880Q6PDB4 577 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 LILRA3Q8N6C8 439 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-209ENST00000472056 PAGE4O60829 102 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 RELQ04864 619 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-209ENST00000472056 C19orf54Q5BKX5 351 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 ONECUT1Q9UBC0 465 aa11.68□□□□□ -0.54
COL6A3-209ENST00000472056 HIGD1AQ9Y241 93 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 CARHSP1Q9Y2V2 147 aaKnown RBP11.67□□□□□ -0.54
COL6A3-209ENST00000472056 FFAR1O14842 300 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 CTLA4P16410 223 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 LRRC75BQ2VPJ9 315 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 HIKESHIQ53FT3 197 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 TEX29Q8N6K0 151 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 CADM4Q8NFZ8 388 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 EIF3GO75821 320 aaKnown RBP eCLIP11.67□□□□□ -0.54
COL6A3-209ENST00000472056 TRGC2P03986 189 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 PSG9Q00887 426 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 ATOH1Q92858 354 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-209ENST00000472056 LINC01549A6NIU2 74 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 ZNF660Q6AZW8 331 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-209ENST00000472056 RFLNAQ6ZTI6 216 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 GAPTQ8N292 157 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 TRGV5A0A0B4J1U4 118 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 ZNF729A6NN14 1252 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-209ENST00000472056 CDX4O14627 284 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms