RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 TBX5Q99593 518 aa3.93□□□□□ -1.78
PTPN4-209ENST00000469511 SLC25A32Q9H2D1 315 aa3.93□□□□□ -1.78
PTPN4-209ENST00000469511 FBXL15Q9H469 300 aa3.93□□□□□ -1.78
PTPN4-209ENST00000469511 PLEKHA1Q9HB21 404 aa3.93□□□□□ -1.78
PTPN4-209ENST00000469511 FGFR1OP2Q9NVK5 253 aa3.93□□□□□ -1.78
PTPN4-209ENST00000469511 CNOT2Q9NZN8 540 aaKnown RBP3.93□□□□□ -1.78
PTPN4-209ENST00000469511 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.93□□□□□ -1.78
PTPN4-209ENST00000469511 FOXA2Q9Y261 457 aaPredicted RBP3.93□□□□□ -1.78
PTPN4-209ENST00000469511 AP3M1Q9Y2T2 418 aa3.93□□□□□ -1.78
PTPN4-209ENST00000469511 APOBP04114 4563 aaKnown RBP3.92□□□□□ -1.78
PTPN4-209ENST00000469511 LOC107986453A0A1B0GWG9 222 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 MSGN1A6NI15 193 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 DHRS7CA6NNS2 312 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 SDCBPO00560 298 aaPredicted RBP3.92□□□□□ -1.78
PTPN4-209ENST00000469511 MITFO75030 526 aaPredicted RBP3.92□□□□□ -1.78
PTPN4-209ENST00000469511 KRT36O76013 467 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 TPPPO94811 219 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 TRGV3P03979 118 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 ATP6V1B2P21281 511 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 PRKACGP22612 351 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 ALDH3A2P51648 485 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 CRIP2P52943 208 aaPredicted RBP3.92□□□□□ -1.78
PTPN4-209ENST00000469511 ADARB1P78563 741 aaKnown RBP3.92□□□□□ -1.78
PTPN4-209ENST00000469511 GNMTQ14749 295 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 PIGYQ3MUY2 71 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 SLC35D3Q5M8T2 416 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 UNQ5815/PRO19632Q6UWF5 114 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 HACD2Q6Y1H2 254 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 PPP1R27Q86WC6 154 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 SLC35F2Q8IXU6 374 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 Q8N402 240 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 TCEANCQ8N8B7 351 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 ZNF565Q8N9K5 539 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 DNAAF1Q8NEP3 725 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 LFNGQ8NES3 379 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 OR5T1Q8NG75 326 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 OR10G2Q8NGC3 310 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 OR8H1Q8NGG4 311 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 OR51A4Q8NGJ6 313 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 CNIH3Q8TBE1 160 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 ARL11Q969Q4 196 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 MCUR1Q96AQ8 359 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 NSMCE2Q96MF7 247 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 RDH12Q96NR8 316 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 OPALINQ96PE5 141 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 CLCC1Q96S66 551 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 MLST8Q9BVC4 326 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 ALG8Q9BVK2 526 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 MRPL20Q9BYC9 149 aaKnown RBP3.92□□□□□ -1.78
PTPN4-209ENST00000469511 EFCAB1Q9HAE3 211 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 ADGRL4Q9HBW9 690 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 SLC25A19Q9HC21 320 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 KLK5Q9Y337 293 aaPredicted RBP3.92□□□□□ -1.78
PTPN4-209ENST00000469511 SNX5Q9Y5X3 404 aa3.92□□□□□ -1.78
PTPN4-209ENST00000469511 AQP12BA6NM10 295 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 ARPC1BO15143 372 aaKnown RBP3.91□□□□□ -1.78
PTPN4-209ENST00000469511 MPPED1O15442 326 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 NBR2O15453 112 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 PRKYO43930 277 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 E2F6O75461 281 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 GATBO75879 557 aaKnown RBP3.91□□□□□ -1.78
PTPN4-209ENST00000469511 NDUFA3O95167 84 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 CYB5AP00167 134 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 FASP25445 335 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 OR3A3P47888 321 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 ZNF137PP52743 207 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 TIRAPP58753 221 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 LINC00205P59089 165 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 NANOS2P60321 138 aaKnown RBP3.91□□□□□ -1.78
PTPN4-209ENST00000469511 NANOS3P60323 173 aaKnown RBP3.91□□□□□ -1.78
PTPN4-209ENST00000469511 SSBP2P81877 361 aaPredicted RBP3.91□□□□□ -1.78
PTPN4-209ENST00000469511 GUCA2BQ16661 112 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 DEFB135Q30KP9 77 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 DEFB114Q30KQ6 69 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 ACTBL2Q562R1 376 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 OR2T5Q6IEZ7 315 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 LCN12Q6JVE5 192 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 CD200R1LQ6Q8B3 271 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 GLDNQ6ZMI3 551 aaPredicted RBP3.91□□□□□ -1.78
PTPN4-209ENST00000469511 SLC16A12Q6ZSM3 486 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 ZNF645Q8N7E2 425 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 SUMF2Q8NBJ7 301 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 CHST4Q8NCG5 386 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 NPBQ8NG41 125 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 OR10A7Q8NGE5 316 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 OR13C9Q8NGT0 318 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 OR2T29Q8NH02 315 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 OR1L1Q8NH94 360 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 ABHD5Q8WTS1 349 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 ASB17Q8WXJ9 295 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 CACNG8Q8WXS5 425 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 ZNF251Q9BRH9 671 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 AIFM2Q9BRQ8 373 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 BARHL1Q9BZE3 327 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 NCOR1P1Q9H4R4 102 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 CCDC134Q9H6E4 229 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 NEK6Q9HC98 313 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 RANGRFQ9HD47 186 aaPredicted RBP3.91□□□□□ -1.78
PTPN4-209ENST00000469511 TVP23BQ9NYZ1 205 aa3.91□□□□□ -1.78
PTPN4-209ENST00000469511 APLNQ9ULZ1 77 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms