RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 RRP9O43818 475 aaKnown RBP10.42□□□□□ -0.74
COL28A1-206ENST00000465339 SNRNP70P08621 437 aaKnown RBP10.42□□□□□ -0.74
COL28A1-206ENST00000465339 ZNF137PP52743 207 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 BLCAPP62952 87 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 HABP2Q14520 560 aaPredicted RBP10.42□□□□□ -0.74
COL28A1-206ENST00000465339 TIMM50Q3ZCQ8 353 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 PLAC9Q5JTB6 97 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 FAM53AQ6NSI3 398 aaPredicted RBP10.42□□□□□ -0.74
COL28A1-206ENST00000465339 MOB3BQ86TA1 216 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 NR2C2APQ86WQ0 139 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 OR52L2PQ8NGH6 319 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 OR10R2Q8NGX6 335 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 OR56B4Q8NH76 319 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 SETD6Q8TBK2 473 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 RTN4IP1Q8WWV3 396 aaPredicted RBP10.42□□□□□ -0.74
COL28A1-206ENST00000465339 CMSS1Q9BQ75 279 aaKnown RBP10.42□□□□□ -0.74
COL28A1-206ENST00000465339 C12orf4Q9NQ89 552 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 SERTAD4Q9NUC0 356 aa10.42□□□□□ -0.74
COL28A1-206ENST00000465339 M0QZ24 198 aa10.41□□□□□ -0.74
COL28A1-206ENST00000465339 RAB27BO00194 218 aa10.41□□□□□ -0.74
COL28A1-206ENST00000465339 SLC31A2O15432 143 aa10.41□□□□□ -0.74
COL28A1-206ENST00000465339 SLC2A2P11168 524 aaPredicted RBP10.41□□□□□ -0.74
COL28A1-206ENST00000465339 SDC2P34741 201 aa10.41□□□□□ -0.74
COL28A1-206ENST00000465339 MRPS15P82914 257 aaKnown RBP10.41□□□□□ -0.74
COL28A1-206ENST00000465339 PLA2G7Q13093 441 aa10.41□□□□□ -0.74
COL28A1-206ENST00000465339 HES1Q14469 280 aa10.41□□□□□ -0.74
COL28A1-206ENST00000465339 HERPUD1Q15011 391 aa10.41□□□□□ -0.74
COL28A1-206ENST00000465339 ARL6IP1Q15041 203 aa10.41□□□□□ -0.74
COL28A1-206ENST00000465339 IL1F10Q8WWZ1 152 aa10.41□□□□□ -0.74
COL28A1-206ENST00000465339 Q9N2K0 584 aa10.41□□□□□ -0.74
COL28A1-206ENST00000465339 TET2Q6N021 2002 aaPredicted RBP10.4□□□□□ -0.74
COL28A1-206ENST00000465339 LOC100506127A0A0U1RQW1 187 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 SMIM30A4D0T7 59 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 SERPINE3A8MV23 424 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 LANCL1O43813 399 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 PEX14O75381 377 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 IGKV1D-33P01593 117 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 IGKV1-33P01594 117 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 CD3GP09693 182 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 TMEM11P17152 192 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 ZBTB25P24278 435 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 CD1BP29016 333 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 PPP1CCP36873 323 aaKnown RBP10.4□□□□□ -0.74
COL28A1-206ENST00000465339 REG1BP48304 166 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 SCAND1P57086 179 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 EBI3Q14213 229 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 GNMTQ14749 295 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 SFXN4Q6P4A7 337 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 Q6ZPA2 131 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 C5orf24Q7Z6I8 188 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 TGIF2LXQ8IUE1 241 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 LYG1Q8N1E2 194 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 KLHDC1Q8N7A1 406 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 OR2AK2Q8NG84 335 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 OR2T10Q8NGZ9 312 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 HDHD3Q9BSH5 251 aaPredicted RBP10.4□□□□□ -0.74
COL28A1-206ENST00000465339 ABHD14AQ9BUJ0 271 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 ATG5Q9H1Y0 275 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 GHITMQ9H3K2 345 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 DAPK2Q9UIK4 370 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 KCNK7Q9Y2U2 307 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 MOB4Q9Y3A3 225 aa10.4□□□□□ -0.74
COL28A1-206ENST00000465339 MGAM2Q2M2H8 2515 aa10.4□□□□□ -0.75
COL28A1-206ENST00000465339 A0A0B4J203 849 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 TRIM64CA6NLI5 447 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 TRDCB7Z8K6 153 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 ITGB1BP1O14713 200 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 TMEM127O75204 238 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 SCGNO76038 276 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 AMY1AP04745 511 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 AMY2AP04746 511 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 VSIG10L2P0DP72 767 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 HIST1H1DP16402 221 aaKnown RBP10.39□□□□□ -0.75
COL28A1-206ENST00000465339 VDAC2P45880 294 aaPredicted RBP10.39□□□□□ -0.75
COL28A1-206ENST00000465339 HLA-DRB3P79483 266 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 MXD1Q05195 221 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 MOGAT2Q3SYC2 334 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 ABCA11PQ4W5N1 156 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 Q6ZS46 218 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 IZUMO1Q8IYV9 350 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 CENPOQ9BU64 300 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 WNT10AQ9GZT5 417 aa10.39□□□□□ -0.75
COL28A1-206ENST00000465339 MFNGO00587 321 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 HSPA12AO43301 675 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 FGF16O43320 207 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 AIREO43918 545 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 FBXO24O75426 580 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 PF4P02776 101 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 GNB3P16520 340 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 CEACAM6P40199 344 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 TNP2Q05952 138 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 HNF4GQ14541 408 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 FBLN7Q53RD9 439 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 CROCCP3Q8IVE0 287 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 ODF3L1Q8IXM7 274 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 EDARADDQ8WWZ3 215 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 ANAPC16Q96DE5 110 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 YIPF6Q96EC8 236 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 RNF167Q9H6Y7 350 aa10.38□□□□□ -0.75
COL28A1-206ENST00000465339 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms