RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 NBR2O15453 112 aa17.5■□□□□ 0.39
USP4-208ENST00000464168 GLAP06280 429 aa17.5■□□□□ 0.39
USP4-208ENST00000464168 SPNP16150 400 aa17.5■□□□□ 0.39
USP4-208ENST00000464168 FSTP19883 344 aa17.5■□□□□ 0.39
USP4-208ENST00000464168 YIF1BQ5BJH7 314 aa17.5■□□□□ 0.39
USP4-208ENST00000464168 NPBQ8NG41 125 aa17.5■□□□□ 0.39
USP4-208ENST00000464168 CHCHD3Q9NX63 227 aaKnown RBP17.5■□□□□ 0.39
USP4-208ENST00000464168 KCNIP1Q9NZI2 227 aa17.5■□□□□ 0.39
USP4-208ENST00000464168 JPT1Q9UK76 154 aa17.5■□□□□ 0.39
USP4-208ENST00000464168 DIMT1Q9UNQ2 313 aaKnown RBP17.5■□□□□ 0.39
USP4-208ENST00000464168 A0A1W2PPK0 400 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 SAP30O75446 220 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 MGMTP16455 207 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 OR3A3P47888 321 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 C19orf54Q5BKX5 351 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 AWAT2Q6E213 333 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 ZNF833PQ6ZTB9 187 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 ZNF554Q86TJ5 538 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 LYPD6Q86Y78 171 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 ZFP41Q8N8Y5 198 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 PGLYRP3Q96LB9 341 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 Q96M66 194 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 FBXO7Q9Y3I1 522 aa17.49■□□□□ 0.39
USP4-208ENST00000464168 SOX15O60248 233 aa17.48■□□□□ 0.39
USP4-208ENST00000464168 FRMD6-AS1P0C7T7 363 aa17.48■□□□□ 0.39
USP4-208ENST00000464168 SLURP1P55000 103 aa17.48■□□□□ 0.39
USP4-208ENST00000464168 HTD2P86397 168 aa17.48■□□□□ 0.39
USP4-208ENST00000464168 NDPQ00604 133 aa17.48■□□□□ 0.39
USP4-208ENST00000464168 CDH26Q8IXH8 852 aa17.48■□□□□ 0.39
USP4-208ENST00000464168 ZNF485Q8NCK3 441 aa17.48■□□□□ 0.39
USP4-208ENST00000464168 MRPL30Q8TCC3 161 aaKnown RBP17.48■□□□□ 0.39
USP4-208ENST00000464168 OR14A2Q96R54 314 aa17.48■□□□□ 0.39
USP4-208ENST00000464168 TOLLIPQ9H0E2 274 aa17.48■□□□□ 0.39
USP4-208ENST00000464168 TPSG1Q9NRR2 321 aa17.48■□□□□ 0.39
USP4-208ENST00000464168 EXOSC1Q9Y3B2 195 aaKnown RBP17.48■□□□□ 0.39
USP4-208ENST00000464168 YPEL1O60688 119 aa17.47■□□□□ 0.39
USP4-208ENST00000464168 CRTAPO75718 401 aaPredicted RBP17.47■□□□□ 0.39
USP4-208ENST00000464168 NDUFA3O95167 84 aa17.47■□□□□ 0.39
USP4-208ENST00000464168 MYL12AP19105 171 aa17.47■□□□□ 0.39
USP4-208ENST00000464168 GABPB1Q06547 395 aaPredicted RBP17.47■□□□□ 0.39
USP4-208ENST00000464168 LY6G6FQ5SQ64 297 aa17.47■□□□□ 0.39
USP4-208ENST00000464168 YPEL2Q96QA6 119 aa17.47■□□□□ 0.39
USP4-208ENST00000464168 SAA2-SAA4A0A096LPE2 208 aa17.46■□□□□ 0.39
USP4-208ENST00000464168 IRGMA1A4Y4 181 aa17.46■□□□□ 0.39
USP4-208ENST00000464168 LINC01619G3V211 115 aa17.46■□□□□ 0.39
USP4-208ENST00000464168 PDCD6O75340 191 aa17.46■□□□□ 0.39
USP4-208ENST00000464168 MAS1P04201 325 aa17.46■□□□□ 0.39
USP4-208ENST00000464168 SAA2P0DJI9 122 aaPredicted RBP17.46■□□□□ 0.39
USP4-208ENST00000464168 GP9P14770 177 aa17.46■□□□□ 0.39
USP4-208ENST00000464168 CRIP2P52943 208 aaPredicted RBP17.46■□□□□ 0.39
USP4-208ENST00000464168 C6orf141Q5SZD1 244 aa17.46■□□□□ 0.39
USP4-208ENST00000464168 ACSM6Q6P461 480 aa17.46■□□□□ 0.39
USP4-208ENST00000464168 CASTOR1Q8WTX7 329 aa17.46■□□□□ 0.39
USP4-208ENST00000464168 KIAA1456Q9P272 454 aa17.46■□□□□ 0.39
USP4-208ENST00000464168 ERGIC3Q9Y282 383 aa17.46■□□□□ 0.39
USP4-208ENST00000464168 TRIM64CA6NLI5 447 aa17.45■□□□□ 0.38
USP4-208ENST00000464168 RGS11O94810 467 aa17.45■□□□□ 0.38
USP4-208ENST00000464168 EGR2P11161 476 aaPredicted RBP17.45■□□□□ 0.38
USP4-208ENST00000464168 LYL1P12980 280 aa17.45■□□□□ 0.38
USP4-208ENST00000464168 CX3CL1P78423 397 aa17.45■□□□□ 0.38
USP4-208ENST00000464168 ECSCRQ19T08 205 aa17.45■□□□□ 0.38
USP4-208ENST00000464168 ZNF660Q6AZW8 331 aaPredicted RBP17.45■□□□□ 0.38
USP4-208ENST00000464168 ARPC1AQ92747 370 aa17.45■□□□□ 0.38
USP4-208ENST00000464168 GALMQ96C23 342 aa17.45■□□□□ 0.38
USP4-208ENST00000464168 CST11Q9H112 138 aa17.45■□□□□ 0.38
USP4-208ENST00000464168 IFI27L2Q9H2X8 130 aa17.45■□□□□ 0.38
USP4-208ENST00000464168 S100A14Q9HCY8 104 aa17.45■□□□□ 0.38
USP4-208ENST00000464168 FOXA2Q9Y261 457 aaPredicted RBP17.45■□□□□ 0.38
USP4-208ENST00000464168 IGHV4OR15-8A0A075B7B6 117 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 A0A087WW49 117 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 A0A1W2PN81 502 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 BAG2O95816 211 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 LGALS1P09382 135 aaKnown RBP17.44■□□□□ 0.38
USP4-208ENST00000464168 CHRNA7P36544 502 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 CAPGP40121 348 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 C10orf67Q8IYJ2 551 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 PQLC1Q8N2U9 271 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 ZNF555Q8NEP9 628 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 OR2AK2Q8NG84 335 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 FAM46BQ96A09 425 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 TMEM80Q96HE8 168 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 DERL3Q96Q80 235 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 GHITMQ9H3K2 345 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 FBXL15Q9H469 300 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 GAR1Q9NY12 217 aaKnown RBP17.44■□□□□ 0.38
USP4-208ENST00000464168 LRRC42Q9Y546 428 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 NUBP2Q9Y5Y2 271 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 CSMD3Q7Z407 3707 aa17.44■□□□□ 0.38
USP4-208ENST00000464168 DNAH1Q9P2D7 4330 aa17.43■□□□□ 0.38
USP4-208ENST00000464168 FCN1O00602 326 aa17.43■□□□□ 0.38
USP4-208ENST00000464168 FAM131AQ6UXB0 335 aa17.43■□□□□ 0.38
USP4-208ENST00000464168 OR6Q1Q8NGQ2 317 aa17.43■□□□□ 0.38
USP4-208ENST00000464168 ZMAT4Q9H898 229 aa17.43■□□□□ 0.38
USP4-208ENST00000464168 SMPD3Q9NY59 655 aaPredicted RBP17.43■□□□□ 0.38
USP4-208ENST00000464168 A3GALT2U3KPV4 340 aa17.43■□□□□ 0.38
USP4-208ENST00000464168 EPPK1P58107 5090 aaKnown RBP17.42■□□□□ 0.38
USP4-208ENST00000464168 PNMA8CA0A1B0GUJ8 204 aa17.42■□□□□ 0.38
USP4-208ENST00000464168 RRHO14718 337 aa17.42■□□□□ 0.38
USP4-208ENST00000464168 DOC2BQ14184 412 aa17.42■□□□□ 0.38
USP4-208ENST00000464168 HMGN3Q15651 99 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms