RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CEACAM21Q3KPI0 293 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 RHOVQ96L33 236 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 OR2V2Q96R30 315 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 COL11A1P12107 1806 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 LYZL6O75951 148 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 NPY1RP25929 384 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 MNX1P50219 401 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 PPOXP50336 477 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 PRRX1P54821 245 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 TUSC5Q8IXB3 177 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 DUSP15Q9H1R2 295 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 IL19Q9UHD0 177 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 C3orf80F5H4A9 247 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 CDIPTO14735 213 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 TCFL5Q9UL49 500 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 NRXN2Q9P2S2 1712 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 A0A1W2PQF6 199 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 CCL3P10147 92 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 CD1BP29016 333 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 OR2I1PQ8NGU4 316 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 WASHC3Q9Y3C0 194 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 SMOC1Q9H4F8 434 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 TRBV23-1A0A0A0MS06 115 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 OR4B1Q8NGF8 309 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 RPEQ96AT9 228 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 PERPQ96FX8 193 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 COL4A5P29400 1685 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 IGLV3-21P80748 117 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 APCDD1LQ8NCL9 501 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 ZNF385AQ96PM9 386 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 RAB1BQ9H0U4 201 aa16.49■□□□□ 0.23
CCDC88B-204ENST00000463837 RND3P61587 244 aa16.48■□□□□ 0.23
CCDC88B-204ENST00000463837 Q56UQ5 140 aa16.48■□□□□ 0.23
CCDC88B-204ENST00000463837 SP7Q8TDD2 431 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-204ENST00000463837 THYN1Q9P016 225 aa16.48■□□□□ 0.23
CCDC88B-204ENST00000463837 TDRD15B5MCY1 1934 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-204ENST00000463837 SFTPCP11686 197 aa16.48■□□□□ 0.23
CCDC88B-204ENST00000463837 GLIPR1P48060 266 aa16.48■□□□□ 0.23
CCDC88B-204ENST00000463837 HPRT1P00492 218 aa16.48■□□□□ 0.23
CCDC88B-204ENST00000463837 UCNP55089 124 aa16.48■□□□□ 0.23
CCDC88B-204ENST00000463837 PIPOXQ9P0Z9 390 aa16.48■□□□□ 0.23
CCDC88B-204ENST00000463837 ANKRD31Q8N7Z5 1873 aa16.48■□□□□ 0.23
CCDC88B-204ENST00000463837 SYNGR1O43759 233 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 SELENOHQ8IZQ5 122 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 OR1B1Q8NGR6 318 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 RAB1CQ92928 201 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 ZNF71Q9NQZ8 489 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 PPIHO43447 177 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 IL11P20809 199 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 ID4P47928 161 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 C10orf113Q5VZT2 155 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 MS4A18H0YCH9 400 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 CIDEAO60543 219 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 MS4A18Q3C1V0 323 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 RSG1Q9BU20 258 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 NPVFQ9HCQ7 196 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 NCBP2LA6PVI3 153 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 K7ESF4 209 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 SAXO1Q8IYX7 474 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 TMEM251Q8N6I4 163 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 Q96M66 194 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 LHFPL6Q9Y693 200 aa16.47■□□□□ 0.23
CCDC88B-204ENST00000463837 TAF1LQ8IZX4 1826 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 LYZP61626 148 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 TMEM187Q14656 261 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 C1orf174Q8IYL3 243 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 LRRC75AQ8NAA5 344 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 TAF15Q92804 592 aaKnown RBP eCLIP16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 ADIPOR1Q96A54 375 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 H0YL77 283 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 CD3EP07766 207 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 INO80CQ6PI98 192 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 MARS2Q96GW9 593 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 CLN8Q9UBY8 286 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 CKAP5Q14008 2032 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 TGIF2-C20orf24A0A0A6YYL0 155 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 THY1P04216 161 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 MELTFP08582 738 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 ZNF665Q9H7R5 613 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 DNAJC13O75165 2243 aa16.46■□□□□ 0.23
CCDC88B-204ENST00000463837 LMX1BO60663 402 aa16.46■□□□□ 0.22
CCDC88B-204ENST00000463837 PRSS1P07477 247 aa16.46■□□□□ 0.22
CCDC88B-204ENST00000463837 EFNB1P98172 346 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 PSG4Q00888 419 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 ONECUT1Q9UBC0 465 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 TRAV38-1A0A0B4J264 116 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 OR2T8A6NH00 312 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 CDC42EP3Q9UKI2 254 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 IGHV4-34P06331 123 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 ZNF708P17019 499 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 HIKESHIQ53FT3 197 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 OR2D3Q8NGH3 330 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 SCARF2Q96GP6 870 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 GPR61Q9BZJ8 451 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 APC2O95996 2303 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 PGLYRP1O75594 196 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 COL8A1P27658 744 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 PPP1CCP36873 323 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 SOX8P57073 446 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms